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Commit 4b2e0039 authored by Brandi Cantarel's avatar Brandi Cantarel
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update warning in perl -i

parent 3776538b
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......@@ -64,7 +64,7 @@ mkdir -p temp
if [[ -z $tid ]]
then
tid=`samtools view -H ${sbam} |grep '^@RG' |perl -pi -e 's/\t/\n/g' |grep ID |cut -f 2 -d ':'`
tid=`samtools view -H ${sbam} |grep '^@RG' |perl -pe 's/\t/\n/g' |grep ID |cut -f 2 -d ':'`
fi
bams=''
......
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