alignment/bam2tdf.sh

alignment/bamqc.sh

alignment/combine_idxstats.pl

alignment/dnaseqalign.sh

alignment/filter_genefusions.pl

alignment/hisat_genotype.sh

alignment/indexbams.sh

alignment/markdups.sh

alignment/rnaseqalign.sh

alignment/starfusion.sh

alignment/viralalign.sh

genect_rnaseq/geneabundance.sh

genect_rnaseq/statanal.sh

obsolete/annot_sv.pl

obsolete/cBioPortal_documents.pl

obsolete/parse_svresults.pl

obsolete/somatic_callers.sh

obsolete/svannot.pl

obsolete/uniform_integrated_vcf.pl

preproc_fastq/trimgalore.sh