Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
S
Setup_for_BioHPC
Manage
Activity
Members
Labels
Plan
Issues
0
Issue boards
Milestones
Iterations
Wiki
Requirements
Code
Merge requests
0
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Container Registry
Operate
Environments
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
ivandorsolab
Setup_for_BioHPC
Commits
876b9bd2
Commit
876b9bd2
authored
6 years ago
by
Chi Pak
Browse files
Options
Downloads
Patches
Plain Diff
Update README.md
parent
d0a8264b
Branches
Branches containing commit
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
README.md
+51
-9
51 additions, 9 deletions
README.md
with
51 additions
and
9 deletions
README.md
+
51
−
9
View file @
876b9bd2
General BioHPC Setup
====
Instructions for logging into BioHPC and adding SSH key to Git
hub
profile.
The
latter is required to clone Github repos from the dorsolab group.
Instructions for logging into BioHPC
/Web-Terminal
and adding SSH key to
your
Git profile.
The
latter is required to clone Github repos from the dorsolab group.
<br>
Logging into BioHPC
----
## Logging into BioHPC
There are two options for connecting to BioHPC.
*
Web Visualization Terminal
*
Linux/Mac Terminal
If you're a
**Windows**
user and do not want to install the Linux subsystem, use the
**Web Visualization Terminal**
.
If you're a
**Linux/Mac**
user, you can connect to BioHPC via your local terminal or using the Web Visualization Terminal.
### Logging into BioHPC via Web Visualization Terminal
Log into the
[
Portal BioHPC
](
https://portal.biohpc.swmed.edu
)
page.
Use your Portal username/password (
*not your UTSW credentials*
).
Click on
**Web Visualization**
under
**Cloud Services**

Download and install
**TurboVNC**
Login into your UTSW BioHPC account. In the Linux/Mac terminal, type

Click on
**Launch Job**

Wait for
**PENDING**

When Completed you should see

Click on
**Connect with VNC Client**
.
This will download a file called
*BioHPCxxx.vnc*
.
Click on the VNC file to launch your Web Visualization Terminal.
### Logging into BioHPC via Linux/Mac Terminal
Open up a Linux/Mac terminal. In the terminal, type
```
ssh username@nucleus.biohpc.swmed.edu
...
...
@@ -17,11 +57,13 @@ ssh username@nucleus.biohpc.swmed.edu
where
`username`
is your individual user account name.
Then type in your
`password`
to complete the login process.
If you have forgotten your
`password`
, you can reset it
[
here
](
https://portal.biohpc.swmed.edu/accounts/password-change/
)
.
After logging in, go to your individual
`project`
folder.
Using the username -
`pikachu`
After logging in, go to your individual
`project`
folder.
```
cd /project/SCCC/DOrso_lab/
pikachu
cd /project/SCCC/DOrso_lab/
username
```
<br>
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment