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Commit 876b9bd2 authored by Chi Pak's avatar Chi Pak
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Update README.md

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General BioHPC Setup
====
Instructions for logging into BioHPC and adding SSH key to Github profile. The
latter is required to clone Github repos from the dorsolab group.
Instructions for logging into BioHPC/Web-Terminal and adding SSH key to your Git profile.
The latter is required to clone Github repos from the dorsolab group.
<br>
Logging into BioHPC
----
## Logging into BioHPC
There are two options for connecting to BioHPC.
* Web Visualization Terminal
* Linux/Mac Terminal
If you're a **Windows** user and do not want to install the Linux subsystem, use the **Web Visualization Terminal**.
If you're a **Linux/Mac** user, you can connect to BioHPC via your local terminal or using the Web Visualization Terminal.
### Logging into BioHPC via Web Visualization Terminal
Log into the [Portal BioHPC](https://portal.biohpc.swmed.edu) page.
Use your Portal username/password (*not your UTSW credentials*).
Click on **Web Visualization** under **Cloud Services**
![Web Visualization](/images/web_visualization.jpg)
Download and install **TurboVNC**
Login into your UTSW BioHPC account. In the Linux/Mac terminal, type
![Turbo VNC](/images/turbovnc_download.jpg)
Click on **Launch Job**
![Launch Job](/images/launch_job.jpg)
Wait for **PENDING**
![Wait](/images/pending_node.jpg)
When Completed you should see
![Complete](/images/connect_via.jpg)
Click on **Connect with VNC Client**.
This will download a file called *BioHPCxxx.vnc*.
Click on the VNC file to launch your Web Visualization Terminal.
### Logging into BioHPC via Linux/Mac Terminal
Open up a Linux/Mac terminal. In the terminal, type
```
ssh username@nucleus.biohpc.swmed.edu
......@@ -17,11 +57,13 @@ ssh username@nucleus.biohpc.swmed.edu
where `username` is your individual user account name.
Then type in your `password` to complete the login process.
If you have forgotten your `password`, you can reset it [here](https://portal.biohpc.swmed.edu/accounts/password-change/).
After logging in, go to your individual `project` folder.
Using the username - `pikachu`
After logging in, go to your individual `project` folder.
```
cd /project/SCCC/DOrso_lab/pikachu
cd /project/SCCC/DOrso_lab/username
```
<br>
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