Skip to content
Snippets Groups Projects
Commit cc7e9daf authored by Chi Pak's avatar Chi Pak
Browse files

add README

parents
Branches
No related merge requests found
Installing R Libraries/Packages
=====
#### List of R (base) packages that should be installed
* tidyverse
* readr
* parallel
* Hmisc
* Rcpp
* ggpubr
* viridis
Install them via
```
module add R
R
install.packages('tidyverse')
install.packages('readr')
install.packages('parallel')
install.packages('Hmisc')
install.packages('Rcpp')
install.packages('ggpubr')
install.packages('viridis')
```
When you install these packages, it will ask
```
Would you like to use a personal library instead? (y/n)
```
Type **y**
It will then ask you to select a CRAN mirror
```
--- Please select a CRAN mirror for use in this session ---
HTTPS CRAN mirror
1: 0-Cloud [https] 2: Algeria [https]
3: Australia (Canberra) [https] 4: Australia (Melbourne 1) [https]
5: Australia (Melbourne 2) [https] 6: Australia (Perth) [https]
7: Austria [https] 8: Belgium (Ghent) [https]
etc
```
Look for the `USA (TX 1)` entry - usually **78**
```
USA (TX 1) [https]
```
Type the **number** of this CRAN mirror
To quit out of R
```
q()
Save workspace image? [y/n/c]:
```
Type **n**
#### List of R Bioconductor packages that should be installed
* RUVSeq
* edgeR
* DESeq2
Install them via
```
source("https://bioconductor.org/biocLite.R")
biocLite('RUVSeq')
biocLite('edgeR')
biocLite('DESeq2')
```
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment