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HIV_NFkB_Modeling
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ivandorsolab
HIV_NFkB_Modeling
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79fb22ce
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79fb22ce
authored
7 years ago
by
Chi Pak
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@@ -9,8 +9,22 @@ JSim Models
[
JSim
](
http://www.physiome.org/jsim/
)
is a system for building and testing quantitative numeric simulations.
Precompiled binaries of JSim can be downloaded from
[
here
](
http://www.physiome.org/jsim/download/index.html
)
.
Four ODE models can be found in the
`/models`
folder
*
ODE_TATmKAP1m.mod - KAP1 expression is lost,
*without*
TAT feedback loop
*
ODE_TATmKAP1p.mod - KAP1 expression is normal,
*without*
TAT feedback loop
*
ODE_TATpKAP1m.mod - KAP1 expression is lost,
*with*
TAT feedback loop
*
ODE_TATpKAP1p.mod - KAP1 expression is normal,
*with*
TAT feedback loop
StochSS Models
----
[
StochSS
](
http://www.stochss.org/
)
is an integrated development environment (IDE) for simulation of biochemical networks.
StochSS can be downloaded from
[
here
](
http://www.stochss.org/?page_id=719
)
.
Four SDE models can also be found in the
`/models`
folder
*
SDE_TATmKAP1m.xml - KAP1 expression is lost,
*without*
TAT feedback loop
*
SDE_TATmKAP1p.xml - KAP1 expression is normal,
*without*
TAT feedback loop
*
SDE_TATpKAP1m.xml - KAP1 expression is lost,
*with*
TAT feedback loop
*
SDE_TATpKAP1p.xml - KAP1 expression is normal,
*with*
TAT feedback loop
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