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Commit 79fb22ce authored by Chi Pak's avatar Chi Pak
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Update README.md

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......@@ -9,8 +9,22 @@ JSim Models
[JSim](http://www.physiome.org/jsim/) is a system for building and testing quantitative numeric simulations.
Precompiled binaries of JSim can be downloaded from [here](http://www.physiome.org/jsim/download/index.html).
Four ODE models can be found in the `/models` folder
* ODE_TATmKAP1m.mod - KAP1 expression is lost, *without* TAT feedback loop
* ODE_TATmKAP1p.mod - KAP1 expression is normal, *without* TAT feedback loop
* ODE_TATpKAP1m.mod - KAP1 expression is lost, *with* TAT feedback loop
* ODE_TATpKAP1p.mod - KAP1 expression is normal, *with* TAT feedback loop
StochSS Models
----
[StochSS](http://www.stochss.org/) is an integrated development environment (IDE) for simulation of biochemical networks.
StochSS can be downloaded from [here](http://www.stochss.org/?page_id=719).
Four SDE models can also be found in the `/models` folder
* SDE_TATmKAP1m.xml - KAP1 expression is lost, *without* TAT feedback loop
* SDE_TATmKAP1p.xml - KAP1 expression is normal, *without* TAT feedback loop
* SDE_TATpKAP1m.xml - KAP1 expression is lost, *with* TAT feedback loop
* SDE_TATpKAP1p.xml - KAP1 expression is normal, *with* TAT feedback loop
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