Merge requests · GUDMAP_RBK / RNA-seq

Merge trains

Add seqtype override 5 of 5 checklist items completed

!93 · created Jul 25, 2021 by Gervaise Henry v2.0.1
To Do confirmed critical enhancement pipeline
- Merged
- Approved
updated Jul 26, 2021
Resolve "Move seqwho reference" 5 of 5 checklist items completed

!94 · created Jul 25, 2021 by Gervaise Henry v2.0.1
To Do critical pipeline
- Merged
- Approved
updated Jul 26, 2021
Resolve "Server changing... need to change .insert calls" 4 of 4 checklist items completed

!92 · created Jul 22, 2021 by Gervaise Henry v2.0.1
To Do confirmed critical data-hub pipeline
- Merged
- Approved
updated Jul 22, 2021
Resolve "Change the CI unit test RIDs" 4 of 4 checklist items completed

!91 · created Jul 21, 2021 by Gervaise Henry v2.0.1
CI/CD To Do bug
- Merged
- Approved
updated Jul 22, 2021
Reimplimented symbolic link of bdbag cookie. 3 of 4 checklist items completed

!90 · created Jul 16, 2021 by Venkat Malladi v2.0.1
To Do bug critical pipeline
- Merged
- 3
updated Jul 19, 2021
Changed the spelling of inferred. 2 of 3 checklist items completed

!89 · created Jul 16, 2021 by Venkat Malladi v2.0.1
To Do bug pipeline
- Merged
- 7
updated Jul 16, 2021
Update rna-seq.nf 4 of 4 checklist items completed

!88 · created Jul 05, 2021 by Jonathan Gesell v2.0.1
To Do bug pipeline
- Merged
- 2
- Approved
updated Jul 15, 2021
Fix 3 of 3 checklist items completed

!69 · created Feb 04, 2021 by Gervaise Henry v2.0.0
To Do bug confirmed data-hub pipeline
- Merged
- Approved
updated Feb 07, 2021
REsolve Misspelled process name in config 5 of 5 checklist items completed

!62 · created Jan 15, 2021 by Venkat Malladi v1.0.2
To Do bug
- Merged
- 4
updated Jan 15, 2021
Resolve "failPreExecution not running on fastq error" 9 of 9 checklist items completed

!60 · created Jan 14, 2021 by Gervaise Henry v1.0.1
To Do bug confirmed critical discussion pipeline
updated Jan 14, 2021
Resolve "Add an option to not upload"

!54 · created Dec 14, 2020 by Gervaise Henry 1.0.0 11-deriva.upload
To Do
updated Dec 17, 2020
Add back parallel trim step. Moved fastqc step after trim. 5 of 12 checklist items completed

!50 · created Nov 12, 2020 by Venkat Malladi FUTURE Version
To Do enhancement
- Merged
- 8
- Approved
updated Nov 19, 2020
Update consistency checks to be fully in python. 4 of 10 checklist items completed

!46 · created Oct 31, 2020 by Venkat Malladi FUTURE Version
CI/CD To Do
- Merged
- 5
- Approved
updated Nov 11, 2020