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Resolve "Add integration CI test" 1 of 7 checklist items completed
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Resolve "Add input bagit to ouput" 4 of 10 checklist items completed
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Resolve "Add CI for Trim" 0 of 7 checklist items completed
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Prep of 1.0.0 release 11 of 12 checklist items completed
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Added trimming step using trimGalore and logging. 1 of 7 checklist items completed