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.gitlab-ci.yml

@@ -214,7 +214,9 @@ outputBag:
 integration_se:
   stage: integration
   only: [merge_requests]
-  except: [/master/]
+  except:
+    variables:
+        - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
   script:
   - hostname
   - ulimit -a
@@ -236,7 +238,9 @@ integration_se:
 integration_pe:
   stage: integration
   only: [merge_requests]
-  except: [/master/]
+  except:
+    variables:
+        - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
   script:
   - hostname
   - ulimit -a
@@ -259,7 +263,9 @@ integration_pe:
 override_inputBag:
   stage: integration
   only: [merge_requests]
-  except: [/master/]
+  except:
+    variables:
+        - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
   script:
   - hostname
   - ulimit -a
@@ -279,7 +285,9 @@ override_inputBag:
 override_fastq:
   stage: integration
   only: [merge_requests]
-  except: [/master/]
+  except:
+    variables:
+        - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
   script:
   - hostname
   - ulimit -a
@@ -299,7 +307,9 @@ override_fastq:
 override_species:
   stage: integration
   only: [merge_requests]
-  except: [/master/]
+  except:
+    variables:
+        - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
   script:
   - hostname
   - ulimit -a
@@ -320,7 +330,9 @@ override_species:
 consistency:
   stage: consistency
   only: [merge_requests]
-  except: [/master/]
+  except:
+    variables:
+        - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
   script:
   - grep -m 1 \"Assigned\":.[0-9] SE_multiqc_data.json | grep -oe '\([0-9.]*\)' > assignedSE.txt
   - grep -m 1 \"Assigned\":.[0-9] PE_multiqc_data.json | grep -oe '\([0-9.]*\)' > assignedPE.txt