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Gervaise Henry authoredab0e4bb6
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aws.config 1.61 KiB
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params {
refSource = "aws"
}
workDir = 's3://gudmap-rbk.output/work'
aws.client.storageEncryption = 'AES256'
aws {
region = 'us-east-2'
batch {
cliPath = '/home/ec2-user/miniconda/bin/aws'
}
}
process {
executor = 'awsbatch'
cpus = 1
memory = '1 GB'
withName: trackStart {
cpus = 1
memory = '1 GB'
}
withName: getBag {
cpus = 1
memory = '1 GB'
}
withName: getData {
cpus = 1
memory = '1 GB'
}
withName: parseMetadata {
cpus = 15
memory = '1 GB'
}
withName: trimData {
cpus = 20
memory = '2 GB'
}
withName: getRefInfer {
cpus = 1
memory = '1 GB'
}
withName: downsampleData {
cpus = 1
memory = '1 GB'
}
withName: alignSampleData {
cpus = 50
memory = '5 GB'
}
withName: inferMetadata {
cpus = 5
memory = '1 GB'
}
withName: getRef {
cpus = 1
memory = '1 GB'
}
withName: alignData {
cpus = 50
memory = '10 GB'
}
withName: dedupData {
cpus = 5
memory = '20 GB'
}
withName: countData {
cpus = 2
memory = '5 GB'
}
withName: makeBigWig {
cpus = 15
memory = '5 GB'
}
withName: fastqc {
cpus = 1
memory = '1 GB'
}
withName: dataQC {
cpus = 15
memory = '2 GB'
}
withName: aggrQC {
cpus = 2
memory = '1 GB'
}
withName: outputBag {
cpus = 1
memory = '1 GB'
}
withName: uploadInputBag {
cpus = 1
memory = '1 GB'
}
withName: uploadExecutionRun {
cpus = 1
memory = '1 GB'
}
withName: uploadQC {
cpus = 1
memory = '1 GB'
}
withName: uploadOutputBag {
cpus = 1
memory = '1 GB'
}
}