Merge requests · Astrocyte

Updated Zenodo id 0 of 7 checklist items completed

cellranger_count!77 · created Aug 15, 2020 by Venkat Malladi 2.2.0
To Do
- Closed
- 3
updated Aug 15, 2020
Update CHANGELOG.md with new v1.1.0 change information.

sra_pipeline!60 · created Jun 17, 2020 by Jonathan Gesell
Updates
- Closed
updated Jun 17, 2020
WIP: Resolve "Add fragment size distribution"

atacseq_analysis!23 · created Jun 02, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Jun 02, 2020
Resolve "TSS enrichment score" 0 of 6 checklist items completed

atacseq_analysis!21 · created May 28, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated May 28, 2020
Resolve "Add FRiP score" 0 of 6 checklist items completed

atacseq_analysis!19 · created May 13, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
- 1
updated May 13, 2020
Update main.nf to replace 'singularity exec' with 'singularity run' to avoid...

sra_pipeline!49 · created Feb 06, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Bug fixes
- Closed
updated Feb 06, 2020
Develop

cellranger_mkfastq!58 · created Jan 06, 2020 by Gervaise Henry v2.1.5 master
- Closed
updated Jan 06, 2020
WIP: Resolve "Fix Trim Reads"

atacseq_analysis!6 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Fix Trim Reads"

atacseq_analysis!5 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Fix Trim Reads"

atacseq_analysis!4 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Remove unnecessary columns from design file"

atacseq_analysis!1 · created Dec 04, 2019 by Holly Ruess Version 2.0 master
- Closed
updated Dec 04, 2019
Remove publish dirs for intermediate processes

cellranger_mkfastq!55 · created Nov 07, 2019 by Gervaise Henry v2.1.5
enhancement
- Closed
updated Nov 07, 2019
WIP: Aws

sra_pipeline!41 · created Oct 08, 2019 by Jonathan Gesell AWS Functionality
Updates testing
- Closed
updated Oct 08, 2019
Updated to most recent images

sra_pipeline!39 · created Oct 01, 2019 by Jonathan Gesell
Updates
- Closed
updated Oct 01, 2019
Resolve "Update to bicfbase:1.1"

sra_pipeline!38 · created Oct 01, 2019 by Jonathan Gesell
Updates
- Closed
updated Oct 01, 2019
WIP: Resolve "Testing fails on new update"

chipseq_analysis!59 · created Sep 16, 2019 by Venkat Malladi 1.1.1 master
bug
- Closed
updated Sep 16, 2019
Remove spaces from design file

cellranger_mkfastq!52 · created Aug 29, 2019 by Jeremy Mathews v2.1.5
bug confirmed
- Closed
updated Aug 29, 2019
Vizapp

cellranger_mkfastq!51 · created Aug 27, 2019 by Jeremy Mathews
- Closed
updated Aug 27, 2019
Revert to origional vizapp

cellranger_mkfastq!49 · created Aug 27, 2019 by Gervaise Henry
- Closed
updated Aug 27, 2019
Resolve "Add pytest to CI"

cellranger_count!50 · created Jul 23, 2019 by Gervaise Henry v1.1.0
To Do documentation
- Closed
updated Jul 23, 2019