Merge requests · Astrocyte

WIP: Resolve "Update RNASeq Shiny Code"

rnaseq!2 · created Jun 20, 2018 by Danni Luo
- Closed
updated Nov 19, 2018
WIP: Resolve "Update documentation"

chipseq_analysis!34 · created Apr 26, 2019 by Holly Ruess 1.0.0 master
documentation enhancement
- Closed
updated Apr 29, 2019
WIP: Resolve "Update documentation"

chipseq_analysis!33 · created Apr 26, 2019 by Holly Ruess 1.0.0 master
documentation enhancement
- Closed
updated Apr 29, 2019
WIP: Resolve "Testing fails on new update"

chipseq_analysis!59 · created Sep 16, 2019 by Venkat Malladi 1.1.1 master
bug
- Closed
updated Sep 16, 2019
WIP: Resolve "Remove unnecessary columns from design file"

atacseq_analysis!1 · created Dec 04, 2019 by Holly Ruess Version 2.0 master
- Closed
updated Dec 04, 2019
WIP: Resolve "Fix Trim Reads"

atacseq_analysis!6 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Fix Trim Reads"

atacseq_analysis!5 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Fix Trim Reads"

atacseq_analysis!4 · created Dec 11, 2019 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Dec 11, 2019
WIP: Resolve "Add in current chip-analysis functionality."

chipseq_analysis!17 · created Jan 11, 2019 by Venkat Malladi 1.0.0 master
enhancement
- Closed
updated Jan 11, 2019
WIP: Resolve "Add fragment size distribution"

atacseq_analysis!23 · created Jun 02, 2020 by Holly Ruess Version 2.0 master
enhancment
- Closed
updated Jun 02, 2020
WIP: Aws

sra_pipeline!41 · created Oct 08, 2019 by Jonathan Gesell AWS Functionality
Updates testing
- Closed
updated Oct 08, 2019
Vizapp

cellranger_mkfastq!51 · created Aug 27, 2019 by Jeremy Mathews
- Closed
updated Aug 27, 2019
Update test_fastqc.py

sra_pipeline!10 · created May 23, 2019 by Jonathan Gesell
- Closed
updated May 23, 2019
Update main.nf to replace 'singularity exec' with 'singularity run' to avoid...

sra_pipeline!49 · created Feb 06, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Bug fixes
- Closed
updated Feb 06, 2020
Update gitignore with nextflow and update software reference test

chipseq_analysis!51 · created Jul 10, 2019 by Jeremy Mathews 1.0.6 master
enhancement
- Closed
updated Jul 10, 2019
Updated Zenodo id 0 of 7 checklist items completed

cellranger_count!77 · created Aug 15, 2020 by Venkat Malladi 2.2.0
To Do
- Closed
- 3
updated Aug 15, 2020
Updated to most recent images

sra_pipeline!39 · created Oct 01, 2019 by Jonathan Gesell
Updates
- Closed
updated Oct 01, 2019
Updated fastqc for better multithreading, updated module lists.

cellranger_mkfastq!9 · created Apr 11, 2019 by Jonathan Gesell master
enhancement
- Closed
updated Apr 12, 2019
Update design_example.txt

chipseq_analysis!36 · created May 02, 2019 by Spencer Barnes master
- Closed
updated May 02, 2019
Update CHANGELOG.md with new v1.1.0 change information.

sra_pipeline!60 · created Jun 17, 2020 by Jonathan Gesell
Updates
- Closed
updated Jun 17, 2020