Merge requests · Astrocyte

Resolve "updateUnitTests" 4 of 5 checklist items completed

sra_pipeline!58 · created Jun 16, 2020 by Jonathan Gesell
Bug fixes Updates testing
- Merged
- 1
- 1
updated Jun 17, 2020
Resolve "Add percent of reads - mitochondria" 5 of 5 checklist items completed

atacseq_analysis!16 · created Mar 24, 2020 by Holly Ruess Version 2.0 master
enhancment
- Merged
- 1
updated Mar 24, 2020
Added new Docker file for motif search (named meme-5.5.4) installed from...

chipseq_analysis!76 · created Oct 16, 2024 by Thamer Alsulaiman master
updated Feb 28, 2025
Containerized version with meme-chip 5.5.4

chipseq_analysis!75 · created Sep 05, 2024 by Thamer Alsulaiman
updated Feb 28, 2025
Fix bugs in published version 2.0.0

rnaseq!11 · created Mar 22, 2022 by Peng Lian
- Merged
updated Mar 22, 2022
Draft: Resolve "Update nf-tower token"

chipseq_analysis!74 · created Jul 25, 2021 by Venkat Malladi 2.0.0
critical
updated Jul 28, 2021
Singularity

rnaseq!10 · created May 20, 2021 by Brandi Cantarel
- Merged
updated May 20, 2021
Update README.md

sra_pipeline!64 · created Nov 24, 2020 by Jeremy Mathews
- Merged
- 1
updated Nov 25, 2020
Add new lib options to biohpc config

cellranger_count!81 · created Nov 20, 2020 by Gervaise Henry 3.0.0
Doing critical
updated Nov 20, 2020
Resolve "Add 5GEXPE/SE as library options"

cellranger_count!80 · created Nov 20, 2020 by Gervaise Henry 3.0.0
Doing critical
updated Nov 20, 2020
Buzz lightyear

cellranger_mkfastq!75 · created Nov 04, 2020 by Jeremy Mathews
- Merged
- 5
- Approved
updated Nov 20, 2020
Develop

cellranger_mkfastq!74 · created Nov 03, 2020 by Gervaise Henry 2.2.0 master
updated Nov 03, 2020
Cellranger 4.0.0 ref 2020 a 8 of 8 checklist items completed

cellranger_mkfastq!73 · created Nov 03, 2020 by Gervaise Henry 2.2.0
updated Nov 03, 2020
Revert "Merge branch 'containerize' into 'cellranger-4.0.0_ref-2020A'"

cellranger_mkfastq!72 · created Oct 30, 2020 by Gervaise Henry cellranger-4.0.0_ref-2020A
updated Oct 30, 2020
WIP: Astrocyte 0.4.0 0 of 7 checklist items completed

cellranger_mkfastq!71 · created Sep 07, 2020 by Venkat Malladi
updated Jun 22, 2021
Resolve "File vs Channel"

sra_pipeline!63 · created Aug 27, 2020 by Jonathan Gesell
- 3
updated Nov 30, 2020
Release 1.1.3 0 of 7 checklist items completed

chipseq_analysis!73 · created Aug 16, 2020 by Venkat Malladi master
updated Aug 16, 2020
Update CHANGELOG.md, workflow/main.nf, workflow/nextflow.config files

cellranger_count!79 · created Aug 15, 2020 by Gervaise Henry 2.2.0 master
updated Aug 15, 2020
Develop

cellranger_count!78 · created Aug 15, 2020 by Gervaise Henry 2.2.0 master
updated Aug 15, 2020
Resolve "Add license."

methylation_analysis!2 · created Aug 15, 2020 by Venkat Malladi
updated Dec 28, 2020