Pipeline · BICF / Astrocyte / sra_pipeline

Merge branch 'master' into '10-FilevChannel'

# Conflicts:
#   workflow/conf/biohpc.config
#   workflow/main.nf
#   workflow/nextflow.config

6 jobs for 10-FilevChannel in 63 minutes and 16 seconds (queued for 3 seconds)

9d786949

Name Stage Failure

	Name	Stage	Failure
failed	integration_consistency	Integration
	Picked up _JAVA_OPTIONS: -Dhttp.proxyHost=proxy.swmed.edu -Dhttp.proxyPort=3128 -Dhttps.proxyHost=proxy.swmed.edu -Dhttps.proxyPort=3128 N E X T F L O W ~ version 0.31.0 Launching `workflow/main.nf` [voluminous_majorana] - revision: b54bf34a46 ERROR ~ No such file: Config file does not exist: /project/BICF/shared/astrocyte_test_ci/qAESZL-b/sra_pipeline/8023/103618/workflow/conf/aws.config -- Check '.nextflow.log' file for details Running after_script Uploading artifacts for failed job ERROR: Job failed: exit status 1

failed

integration_consistency

Integration

Picked up _JAVA_OPTIONS: -Dhttp.proxyHost=proxy.swmed.edu -Dhttp.proxyPort=3128 -Dhttps.proxyHost=proxy.swmed.edu -Dhttps.proxyPort=3128
N E X T F L O W  ~  version 0.31.0
Launching `workflow/main.nf` [voluminous_majorana] - revision: b54bf34a46
ERROR ~ No such file: Config file does not exist: /project/BICF/shared/astrocyte_test_ci/qAESZL-b/sra_pipeline/8023/103618/workflow/conf/aws.config

 -- Check '.nextflow.log' file for details
Running after_script
Uploading artifacts for failed job
ERROR: Job failed: exit status 1