Merge requests · Astrocyte

Remove multiqc module 3 of 7 checklist items completed

cellranger_count!69 · created Apr 26, 2020 by Gervaise Henry
To Do bug
updated Apr 26, 2020
Track.pipeline 3 of 7 checklist items completed

cellranger_count!68 · created Apr 25, 2020 by Gervaise Henry
updated Apr 25, 2020
Track.pipeline

sra_pipeline!56 · created Apr 25, 2020 by Gervaise Henry
updated Apr 28, 2020
Develop 1 of 7 checklist items completed

cellranger_count!67 · created Apr 20, 2020 by Gervaise Henry v2.1.1 master
updated Apr 20, 2020
Add ulimit -u to all cellranger processes 2 of 7 checklist items completed

cellranger_count!66 · created Apr 20, 2020 by Gervaise Henry v2.1.1
Doing To Do bug confirmed critical
updated Apr 20, 2020
Resolve "Paired-end Diffbind peaks gives different answer" after changing random 2 of 2 checklist items completed

chipseq_analysis!69 · created Apr 17, 2020 by Venkat Malladi 1.1.0 master
Test bug
updated Apr 20, 2020
Drop indev in version, finish adding aws details

cellranger_count!65 · created Apr 16, 2020 by Gervaise Henry
updated Apr 16, 2020
Master

cellranger_count!64 · created Apr 16, 2020 by Gervaise Henry
updated Apr 16, 2020
Develop 6 of 7 checklist items completed

cellranger_count!63 · created Apr 15, 2020 by Gervaise Henry master
updated Apr 15, 2020
Resolve "Containerize"

cellranger_count!62 · created Apr 15, 2020 by Gervaise Henry v2.1.1
Doing enhancement
updated Apr 15, 2020
Resolve "Update params to current standards"

cellranger_count!61 · created Apr 14, 2020 by Gervaise Henry v2.1.1
Doing enhancement
updated Apr 15, 2020
Resolve "Add 3':5' param"

cellranger_count!60 · created Apr 14, 2020 by Gervaise Henry v2.1.1
Doing critical enhancement
- Merged
updated Apr 14, 2020
Add License file 2 of 2 checklist items completed

atacseq_analysis!18 · created Apr 06, 2020 by Venkat Malladi Version 2.0 master
updated May 07, 2020
Resolve "Need Zenodo registration"

sra_pipeline!55 · created Apr 06, 2020 by Venkat Malladi
- Merged
- 2
updated Apr 20, 2020
Fix so that runners don't collide and nextflow can continue. 0 of 2 checklist items completed

atacseq_analysis!17 · created Mar 31, 2020 by Venkat Malladi master
updated May 08, 2020
Ci merge test

chipseq_analysis!68 · created Mar 28, 2020 by Venkat Malladi master
- Merged
- 6
updated Apr 16, 2020
Add -B option to output in fastq basecode format; Update Docs; Fix multiple Runs

sra_pipeline!54 · created Mar 26, 2020 by Jeremy Mathews
Bug fixes error correction
- Merged
- 10
updated Jun 01, 2020
Resolve "Add percent of reads - mitochondria" 5 of 5 checklist items completed

atacseq_analysis!16 · created Mar 24, 2020 by Holly Ruess Version 2.0 master
enhancment
- Merged
- 1
updated Mar 24, 2020
Resolve "Rename Plot profile to be consistent with naming" 4 of 4 checklist items completed

chipseq_analysis!67 · created Mar 21, 2020 by Venkat Malladi 1.1.0
Test
- Merged
- 2
updated Apr 21, 2020
Update to test with new astrocyte runner. 0 of 4 checklist items completed

chipseq_analysis!66 · created Mar 19, 2020 by Venkat Malladi 1.1.0 master
- Merged
- 1
updated Mar 21, 2020