Merge requests · Astrocyte

Resolve "Add 3':5' param"

cellranger_count!60 · created Apr 14, 2020 by Gervaise Henry v2.1.1
Doing critical enhancement
- Merged
updated Apr 14, 2020
Add License file 2 of 2 checklist items completed

atacseq_analysis!18 · created Apr 06, 2020 by Venkat Malladi Version 2.0 master
updated May 07, 2020
Resolve "Add percent of reads - mitochondria" 5 of 5 checklist items completed

atacseq_analysis!16 · created Mar 24, 2020 by Holly Ruess Version 2.0 master
enhancment
- Merged
- 1
updated Mar 24, 2020
Resolve "Rename Plot profile to be consistent with naming" 4 of 4 checklist items completed

chipseq_analysis!67 · created Mar 21, 2020 by Venkat Malladi 1.1.0
Test
- Merged
- 2
updated Apr 21, 2020
Update to test with new astrocyte runner. 0 of 4 checklist items completed

chipseq_analysis!66 · created Mar 19, 2020 by Venkat Malladi 1.1.0 master
- Merged
- 1
updated Mar 21, 2020
Resolve "Generate MultiQC report"

atacseq_analysis!15 · created Feb 25, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Feb 25, 2020
Resolve "BUG: thread error on Astrocyte"

cellranger_count!59 · created Feb 21, 2020 by Gervaise Henry v2.1.1
Doing bug confirmed critical
updated Feb 21, 2020
Changed singularity container to allow for rendering of references. 3 of 3 checklist items completed

chipseq_analysis!65 · created Feb 12, 2020 by Venkat Malladi 1.1.1 master
bug
updated Feb 18, 2020
Resolve "Python Version not in Software Version" 3 of 3 checklist items completed

chipseq_analysis!64 · created Feb 12, 2020 by Venkat Malladi 1.1.1 master
bug
updated Mar 02, 2020
Resolve "Single Rep Pool and Pseudo" 3 of 3 checklist items completed

chipseq_analysis!63 · created Feb 12, 2020 by Venkat Malladi 1.1.0 master
bug
- Merged
- 3
updated Mar 24, 2020
Resolve "callPeaksMACS exits when data is bad" 3 of 3 checklist items completed

chipseq_analysis!62 · created Feb 12, 2020 by Venkat Malladi 1.1.1 master
bug
updated Feb 29, 2020
Resolve "Update to Singularity Image 2.0.0 compatability."

sra_pipeline!50 · created Feb 06, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Updates
updated Feb 06, 2020
Update main.nf to replace 'singularity exec' with 'singularity run' to avoid...

sra_pipeline!49 · created Feb 06, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Bug fixes
- Closed
updated Feb 06, 2020
Resolve "Update to Singularity Image 2.0.0 compatability."

sra_pipeline!48 · created Feb 05, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Updates
updated Feb 05, 2020
Remove artifacts.

chipseq_analysis!61 · created Jan 28, 2020 by Venkat Malladi 1.1.1 master
bug
- Merged
updated Jan 28, 2020
Update to 2.0.0 compliance, and updated config file to be more universal.

sra_pipeline!47 · created Jan 16, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Updates
- Merged
updated Jan 16, 2020
Resolve "Fix BioHPC config"

atacseq_analysis!14 · created Jan 07, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jan 07, 2020
Resolve "fix consensus peaks"

atacseq_analysis!13 · created Jan 06, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jan 07, 2020
Develop

cellranger_mkfastq!59 · created Jan 06, 2020 by Gervaise Henry v2.1.5 master
updated Jan 06, 2020
Develop

cellranger_mkfastq!58 · created Jan 06, 2020 by Gervaise Henry v2.1.5 master
- Closed
updated Jan 06, 2020