Merge requests · Astrocyte

Resolve "Add testing badges" 2 of 2 checklist items completed

sra_pipeline!59 · created Jun 17, 2020 by Venkat Malladi
updated Jun 17, 2020
Resolve "updateUnitTests" 4 of 5 checklist items completed

sra_pipeline!58 · created Jun 16, 2020 by Jonathan Gesell
Bug fixes Updates testing
- Merged
- 1
- 1
updated Jun 17, 2020
Resolve "Install methylation"

methylation_analysis!1 · created Jun 12, 2020 by Venkat Malladi
updated Jun 15, 2020
Resolve "Annotate peaks" 5 of 6 checklist items completed

atacseq_analysis!26 · created Jun 11, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jun 11, 2020
Resolve "Blacklist of regions" 5 of 5 checklist items completed

atacseq_analysis!25 · created Jun 09, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jun 09, 2020
Resolve "Add fragment size distribution" 4 of 5 checklist items completed

atacseq_analysis!24 · created Jun 02, 2020 by Venkat Malladi Version 2.0 master
enhancment
- Merged
- 3
updated Jun 09, 2020
Add -B option to output in fastq basecode format; Update Docs; Fix multiple Runs

sra_pipeline!54 · created Mar 26, 2020 by Jeremy Mathews
Bug fixes error correction
- Merged
- 10
updated Jun 01, 2020
Resolve "TSS enrichment score" 5 of 5 checklist items completed

atacseq_analysis!22 · created May 28, 2020 by Venkat Malladi Version 2.0 master
enhancment
updated May 28, 2020
Added logic to allow for multiple SRAs to be linked to a single number, while...

sra_pipeline!57 · created Apr 30, 2020 by Jonathan Gesell 15-SOLID_Sequencing
Bug fixes Doing
updated May 26, 2020
Develop

cellranger_count!70 · created May 25, 2020 by Gervaise Henry v2.1.1 master
updated May 25, 2020
Resolve "Add FRiP score" 5 of 5 checklist items completed

atacseq_analysis!20 · created May 13, 2020 by Venkat Malladi Version 2.0 master
enhancment
updated May 13, 2020
Fix so that runners don't collide and nextflow can continue. 0 of 2 checklist items completed

atacseq_analysis!17 · created Mar 31, 2020 by Venkat Malladi master
updated May 08, 2020
Add License file 2 of 2 checklist items completed

atacseq_analysis!18 · created Apr 06, 2020 by Venkat Malladi Version 2.0 master
updated May 07, 2020
Track.pipeline

sra_pipeline!56 · created Apr 25, 2020 by Gervaise Henry
updated Apr 28, 2020
Remove multiqc module 3 of 7 checklist items completed

cellranger_count!69 · created Apr 26, 2020 by Gervaise Henry
To Do bug
updated Apr 26, 2020
Track.pipeline 3 of 7 checklist items completed

cellranger_count!68 · created Apr 25, 2020 by Gervaise Henry
updated Apr 25, 2020
Resolve "Rename Plot profile to be consistent with naming" 4 of 4 checklist items completed

chipseq_analysis!67 · created Mar 21, 2020 by Venkat Malladi 1.1.0
Test
- Merged
- 2
updated Apr 21, 2020
Develop 1 of 7 checklist items completed

cellranger_count!67 · created Apr 20, 2020 by Gervaise Henry v2.1.1 master
updated Apr 20, 2020
Add ulimit -u to all cellranger processes 2 of 7 checklist items completed

cellranger_count!66 · created Apr 20, 2020 by Gervaise Henry v2.1.1
Doing To Do bug confirmed critical
updated Apr 20, 2020
Resolve "Need Zenodo registration"

sra_pipeline!55 · created Apr 06, 2020 by Venkat Malladi
- Merged
- 2
updated Apr 20, 2020