Merge requests · Astrocyte

Cellranger 4.0.0 ref 2020 a

cellranger_count!75 · created Aug 13, 2020 by Gervaise Henry 2.2.0 50-seurat.object
updated Aug 13, 2020
Issue3087 annotation fix 0 of 7 checklist items completed

chipseq_analysis!72 · created Aug 07, 2020 by Spencer Barnes
updated Aug 07, 2020
Publish 2.0.4

atacseq_analysis!31 · created Jul 31, 2020 by Venkat Malladi master
updated Jul 31, 2020
Update configuration for queue to fix large number of reads. 2 of 2 checklist items completed

atacseq_analysis!30 · created Jul 28, 2020 by Venkat Malladi
bug critical
updated Jul 29, 2020
Cellranger 4.0.0 ref 2020 a

cellranger_mkfastq!70 · created Jul 22, 2020 by Gervaise Henry containerize
updated Jul 22, 2020
Update astrocyte to 0.3.1 0 of 3 checklist items completed

chipseq_analysis!71 · created Jun 29, 2020 by Venkat Malladi 2.0.0
documentation enhancement
- Merged
- 1
updated Jul 01, 2020
Add in astrocyte 0.3.1 test. 0 of 3 checklist items completed

atacseq_analysis!29 · created Jun 29, 2020 by Venkat Malladi Version 2.1.0
documentation enhancment
- Merged
- 1
updated Jul 01, 2020
Fix local process ulimit set

cellranger_mkfastq!69 · created Jun 21, 2020 by Gervaise Henry v2.1.5 master
updated Jun 21, 2020
Fix multi sample, local ulimit set, v2.1.1

cellranger_count!74 · created Jun 21, 2020 by Gervaise Henry v2.1.1 master
updated Jun 21, 2020
Develop

cellranger_count!73 · created Jun 21, 2020 by Gervaise Henry v2.1.1 master
updated Jun 21, 2020
Update configs folder name 0 of 7 checklist items completed

cellranger_count!72 · created Jun 21, 2020 by Gervaise Henry v2.1.1
updated Jun 21, 2020
De containerize 2 of 7 checklist items completed

cellranger_count!71 · created Jun 21, 2020 by Gervaise Henry v2.1.1
updated Jun 21, 2020
Develop

cellranger_mkfastq!68 · created Jun 21, 2020 by Gervaise Henry v2.1.5 master
updated Jun 21, 2020
Revert "Use base mask I1 = 8n, version 2.1.3"

cellranger_mkfastq!67 · created Jun 21, 2020 by Gervaise Henry v2.1.5
updated Jun 21, 2020
Add in pipelinetracking. 0 of 1 checklist item completed

chipseq_analysis!70 · created Jun 21, 2020 by Venkat Malladi
- Merged
- 1
updated Jun 23, 2020
Develop

cellranger_mkfastq!66 · created Jun 20, 2020 by Gervaise Henry v2.1.5 master
updated Jun 20, 2020
Develop

cellranger_mkfastq!65 · created Jun 20, 2020 by Gervaise Henry v2.1.5 master
updated Jun 20, 2020
mkfastq run on high power node, version 2.1.1

cellranger_mkfastq!64 · created Jun 20, 2020 by Gervaise Henry v2.1.5 master
updated Jun 20, 2020
Develop 7 of 8 checklist items completed

cellranger_mkfastq!63 · created Jun 20, 2020 by Gervaise Henry v2.1.5 master
updated Jun 20, 2020
De containerize 3 of 8 checklist items completed

cellranger_mkfastq!62 · created Jun 20, 2020 by Gervaise Henry v2.1.5
updated Jun 20, 2020