Merge requests · Astrocyte

Added second configuration file for Astrocyte.

sra_pipeline!29 · created Jul 18, 2019 by Jonathan Gesell Astrocyte Functionality
testing
updated Jul 18, 2019
Draft: Resolve "Update nf-tower token"

chipseq_analysis!74 · created Jul 25, 2021 by Venkat Malladi 2.0.0
critical
updated Jul 28, 2021
Update astrocyte to 0.3.1 0 of 3 checklist items completed

chipseq_analysis!71 · created Jun 29, 2020 by Venkat Malladi 2.0.0
documentation enhancement
- Merged
- 1
updated Jul 01, 2020
Add in astrocyte 0.3.1 test. 0 of 3 checklist items completed

atacseq_analysis!29 · created Jun 29, 2020 by Venkat Malladi Version 2.1.0
documentation enhancment
- Merged
- 1
updated Jul 01, 2020
Add new lib options to biohpc config

cellranger_count!81 · created Nov 20, 2020 by Gervaise Henry 3.0.0
Doing critical
updated Nov 20, 2020
Resolve "Add 5GEXPE/SE as library options"

cellranger_count!80 · created Nov 20, 2020 by Gervaise Henry 3.0.0
Doing critical
updated Nov 20, 2020
Develop

cellranger_mkfastq!74 · created Nov 03, 2020 by Gervaise Henry 2.2.0 master
updated Nov 03, 2020
Cellranger 4.0.0 ref 2020 a 8 of 8 checklist items completed

cellranger_mkfastq!73 · created Nov 03, 2020 by Gervaise Henry 2.2.0
updated Nov 03, 2020
Update CHANGELOG.md, workflow/main.nf, workflow/nextflow.config files

cellranger_count!79 · created Aug 15, 2020 by Gervaise Henry 2.2.0 master
updated Aug 15, 2020
Develop

cellranger_count!78 · created Aug 15, 2020 by Gervaise Henry 2.2.0 master
updated Aug 15, 2020
Updated Zenodo id 0 of 7 checklist items completed

cellranger_count!77 · created Aug 15, 2020 by Venkat Malladi 2.2.0
To Do
- Closed
- 3
updated Aug 15, 2020
Resolve "Generate Raw RDS file" 7 of 7 checklist items completed

cellranger_count!76 · created Aug 14, 2020 by Gervaise Henry 2.2.0
Doing enhancement
updated Aug 14, 2020
Cellranger 4.0.0 ref 2020 a

cellranger_count!75 · created Aug 13, 2020 by Gervaise Henry 2.2.0 50-seurat.object
updated Aug 13, 2020
Fix local process ulimit set

cellranger_mkfastq!69 · created Jun 21, 2020 by Gervaise Henry v2.1.5 master
updated Jun 21, 2020
Fix multi sample, local ulimit set, v2.1.1

cellranger_count!74 · created Jun 21, 2020 by Gervaise Henry v2.1.1 master
updated Jun 21, 2020
Develop

cellranger_count!73 · created Jun 21, 2020 by Gervaise Henry v2.1.1 master
updated Jun 21, 2020
Update configs folder name 0 of 7 checklist items completed

cellranger_count!72 · created Jun 21, 2020 by Gervaise Henry v2.1.1
updated Jun 21, 2020
De containerize 2 of 7 checklist items completed

cellranger_count!71 · created Jun 21, 2020 by Gervaise Henry v2.1.1
updated Jun 21, 2020
Develop

cellranger_mkfastq!68 · created Jun 21, 2020 by Gervaise Henry v2.1.5 master
updated Jun 21, 2020
Revert "Use base mask I1 = 8n, version 2.1.3"

cellranger_mkfastq!67 · created Jun 21, 2020 by Gervaise Henry v2.1.5
updated Jun 21, 2020