Merge requests · BICF

Update main.nf to replace 'singularity exec' with 'singularity run' to avoid...

BICF/Astrocyte/sra_pipeline!49 · created Feb 06, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Bug fixes
- Closed
updated Feb 06, 2020
Resolve "Update to Singularity Image 2.0.0 compatability."

BICF/Astrocyte/sra_pipeline!48 · created Feb 05, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Updates
updated Feb 05, 2020
Resolve "Surgery Table"

BICF/KCE/kce_etl!11 · created Jan 28, 2020 by Venkat Malladi
updated Jan 28, 2020
Remove artifacts.

BICF/Astrocyte/chipseq_analysis!61 · created Jan 28, 2020 by Venkat Malladi 1.1.1 master
bug
- Merged
updated Jan 28, 2020
Add in tasks.

onboarding!18 · created Jan 24, 2020 by Venkat Malladi
- Merged
updated Feb 26, 2020
Update to 2.0.0 compliance, and updated config file to be more universal.

BICF/Astrocyte/sra_pipeline!47 · created Jan 16, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability
Updates
- Merged
updated Jan 16, 2020
Update README.md

BICF/Astrocyte/sra_pipeline!46 · created Jan 16, 2020 by Jonathan Gesell
- Merged
updated Jan 16, 2020
Update index.md for Astrocyte Functionality.

BICF/Astrocyte/sra_pipeline!45 · created Jan 15, 2020 by Jonathan Gesell Astrocyte Functionality
Updates
updated Jan 15, 2020
Update README.md for clarification of use on Astrocyte.

BICF/Astrocyte/sra_pipeline!44 · created Jan 15, 2020 by Jonathan Gesell Astrocyte Functionality
Updates
updated Jan 15, 2020
Fix documentationn for choosing only fastq files.

BICF/Astrocyte/rnaseq!9 · created Jan 07, 2020 by Venkat Malladi
updated Jan 07, 2020
Resolve "Fix BioHPC config"

BICF/Astrocyte/atacseq_analysis!14 · created Jan 07, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jan 07, 2020
Resolve "fix consensus peaks"

BICF/Astrocyte/atacseq_analysis!13 · created Jan 06, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jan 07, 2020
Develop

BICF/Astrocyte/cellranger_mkfastq!59 · created Jan 06, 2020 by Gervaise Henry v2.1.5 master
updated Jan 06, 2020
Develop

BICF/Astrocyte/cellranger_mkfastq!58 · created Jan 06, 2020 by Gervaise Henry v2.1.5 master
- Closed
updated Jan 06, 2020
Resolve "Fix Pool and Pseudoreps"

BICF/Astrocyte/atacseq_analysis!12 · created Jan 02, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jan 03, 2020
39 aws

BICF/Astrocyte/cellranger_mkfastq!57 · created Dec 31, 2019 by Gervaise Henry v2.1.5
updated Dec 31, 2019
Resolve "TOC - Fee Structure"

onboarding!17 · created Dec 24, 2019 by Venkat Malladi
- Merged
updated Dec 24, 2019
Add in how to do subtasks and redmine url

onboarding!16 · created Dec 24, 2019 by Venkat Malladi
- Merged
updated Dec 24, 2019
Resolve "Fix Convert Reads"

BICF/Astrocyte/atacseq_analysis!11 · created Dec 20, 2019 by Holly Ruess Version 2.0 master
enhancment
updated Dec 27, 2019
Resolve "Fix Experiment QC"

BICF/Astrocyte/atacseq_analysis!10 · created Dec 19, 2019 by Holly Ruess Version 2.0 master
enhancment
updated Dec 20, 2019