Merge requests · BICF

Resolve "Move software version report to the bottom"

BICF/Astrocyte/cellranger_mkfastq!13 · created Apr 12, 2019 by Gervaise Henry Astrocyte Production (v1.0.0)
updated Apr 12, 2019
Resolve "Move module load into nextflow process"

BICF/Astrocyte/cellranger_count!43 · created May 24, 2019 by Jeremy Mathews v1.1.0
enhancement
updated May 24, 2019
Resolve "Missing modules"

BICF/Astrocyte/chipseq_analysis!32 · created Apr 23, 2019 by Venkat Malladi 1.0.0 master
bug
- Merged
updated Apr 23, 2019
Resolve "Migrate cellranger_count basics"

BICF/Astrocyte/cellranger_mkfastq!2 · created Mar 24, 2019 by Gervaise Henry
updated Mar 24, 2019
Resolve "Make tagAlign files"

BICF/Astrocyte/chipseq_analysis!10 · created Oct 23, 2017 by Venkat Malladi master
updated Oct 23, 2017
Resolve "Make param.genomeLocation have full path"

BICF/Astrocyte/cellranger_count!14 · created Mar 10, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 10, 2019
Resolve "Make instructions"

BICF/Astrocyte/cellranger_count!15 · created Mar 10, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 10, 2019
Resolve "Make changelog"

BICF/Astrocyte/cellranger_count!37 · created Apr 27, 2019 by Gervaise Henry v1.1.0
documentation
updated Apr 27, 2019
Resolve "Link changelog to index.md"

BICF/Astrocyte/cellranger_mkfastq!28 · created Apr 27, 2019 by Gervaise Henry v1.2.0
documentation
updated Apr 27, 2019
Resolve "Install methylation"

BICF/Astrocyte/methylation_analysis!1 · created Jun 12, 2020 by Venkat Malladi
updated Jun 15, 2020
Resolve "Include Phantompeakqualtools step"

BICF/Astrocyte/chipseq_analysis!11 · created Oct 24, 2017 by Venkat Malladi master
updated Oct 24, 2017
Resolve "Handle multi-flowcells in fastqc and multiqc"

BICF/Astrocyte/cellranger_mkfastq!18 · created Apr 26, 2019 by Gervaise Henry
To Do bug
updated Apr 26, 2019
Resolve "Generate Raw RDS file" 7 of 7 checklist items completed

BICF/Astrocyte/cellranger_count!76 · created Aug 14, 2020 by Gervaise Henry 2.2.0
Doing enhancement
updated Aug 14, 2020
Resolve "Generate MultiQC report"

BICF/Astrocyte/atacseq_analysis!15 · created Feb 25, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Feb 25, 2020
Resolve "Fix Trim Reads"

BICF/Astrocyte/atacseq_analysis!7 · created Dec 11, 2019 by Venkat Malladi Version 2.0 master
enhancment
updated Dec 11, 2019
Resolve "Fix Pool and Pseudoreps"

BICF/Astrocyte/atacseq_analysis!12 · created Jan 02, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jan 03, 2020
Resolve "Fix Experiment QC"

BICF/Astrocyte/atacseq_analysis!10 · created Dec 19, 2019 by Holly Ruess Version 2.0 master
enhancment
updated Dec 20, 2019
Resolve "Fix CountDesign"

BICF/Astrocyte/cellranger_mkfastq!44 · created Aug 05, 2019 by Jeremy Mathews v1.3.0
bug
updated Aug 05, 2019
Resolve "Fix Convert Reads"

BICF/Astrocyte/atacseq_analysis!11 · created Dec 20, 2019 by Holly Ruess Version 2.0 master
enhancment
updated Dec 27, 2019
Resolve "fix consensus peaks"

BICF/Astrocyte/atacseq_analysis!13 · created Jan 06, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jan 07, 2020