Merge requests · BICF

De containerize 3 of 8 checklist items completed

BICF/Astrocyte/cellranger_mkfastq!62 · created Jun 20, 2020 by Gervaise Henry v2.1.5
updated Jun 20, 2020
Update 6 of 8 checklist items completed

BICF/Astrocyte/cellranger_mkfastq!61 · created Jun 20, 2020 by Gervaise Henry v2.1.5
updated Jun 20, 2020
Master

BICF/Astrocyte/cellranger_mkfastq!60 · created Jun 20, 2020 by Gervaise Henry
updated Jun 20, 2020
Resolve "Tests for astrocyte" 4 of 4 checklist items completed

BICF/Astrocyte/atacseq_analysis!27 · created Jun 12, 2020 by Venkat Malladi master
updated Jun 18, 2020
Patch 2

BICF/Astrocyte/sra_pipeline!61 · created Jun 17, 2020 by Jonathan Gesell Astrocyte Functionality
updated Jun 17, 2020
Resolve "Add testing badges" 2 of 2 checklist items completed

BICF/Astrocyte/sra_pipeline!59 · created Jun 17, 2020 by Venkat Malladi
updated Jun 17, 2020
Resolve "updateUnitTests" 4 of 5 checklist items completed

BICF/Astrocyte/sra_pipeline!58 · created Jun 16, 2020 by Jonathan Gesell
Bug fixes Updates testing
- Merged
- 1
- 1
updated Jun 17, 2020
Resolve "Install methylation"

BICF/Astrocyte/methylation_analysis!1 · created Jun 12, 2020 by Venkat Malladi
updated Jun 15, 2020
Resolve "Annotate peaks" 5 of 6 checklist items completed

BICF/Astrocyte/atacseq_analysis!26 · created Jun 11, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jun 11, 2020
Resolve "Blacklist of regions" 5 of 5 checklist items completed

BICF/Astrocyte/atacseq_analysis!25 · created Jun 09, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jun 09, 2020
Resolve "Add fragment size distribution" 4 of 5 checklist items completed

BICF/Astrocyte/atacseq_analysis!24 · created Jun 02, 2020 by Venkat Malladi Version 2.0 master
enhancment
- Merged
- 3
updated Jun 09, 2020
Add -B option to output in fastq basecode format; Update Docs; Fix multiple Runs

BICF/Astrocyte/sra_pipeline!54 · created Mar 26, 2020 by Jeremy Mathews
Bug fixes error correction
- Merged
- 10
updated Jun 01, 2020
Resolve "TSS enrichment score" 5 of 5 checklist items completed

BICF/Astrocyte/atacseq_analysis!22 · created May 28, 2020 by Venkat Malladi Version 2.0 master
enhancment
updated May 28, 2020
Added logic to allow for multiple SRAs to be linked to a single number, while...

BICF/Astrocyte/sra_pipeline!57 · created Apr 30, 2020 by Jonathan Gesell 15-SOLID_Sequencing
Bug fixes Doing
updated May 26, 2020
Develop

BICF/Astrocyte/cellranger_count!70 · created May 25, 2020 by Gervaise Henry v2.1.1 master
updated May 25, 2020
Resolve "Add FRiP score" 5 of 5 checklist items completed

BICF/Astrocyte/atacseq_analysis!20 · created May 13, 2020 by Venkat Malladi Version 2.0 master
enhancment
updated May 13, 2020
Fix so that runners don't collide and nextflow can continue. 0 of 2 checklist items completed

BICF/Astrocyte/atacseq_analysis!17 · created Mar 31, 2020 by Venkat Malladi master
updated May 08, 2020
Add License file 2 of 2 checklist items completed

BICF/Astrocyte/atacseq_analysis!18 · created Apr 06, 2020 by Venkat Malladi Version 2.0 master
updated May 07, 2020
Track.pipeline

BICF/Astrocyte/sra_pipeline!56 · created Apr 25, 2020 by Gervaise Henry
updated Apr 28, 2020
Remove multiqc module 3 of 7 checklist items completed

BICF/Astrocyte/cellranger_count!69 · created Apr 26, 2020 by Gervaise Henry
To Do bug
updated Apr 26, 2020