Merge requests · BICF

Develop 7 of 8 checklist items completed

BICF/Astrocyte/cellranger_mkfastq!63 · created Jun 20, 2020 by Gervaise Henry v2.1.5 master
updated Jun 20, 2020
De containerize 3 of 8 checklist items completed

BICF/Astrocyte/cellranger_mkfastq!62 · created Jun 20, 2020 by Gervaise Henry v2.1.5
updated Jun 20, 2020
Update 6 of 8 checklist items completed

BICF/Astrocyte/cellranger_mkfastq!61 · created Jun 20, 2020 by Gervaise Henry v2.1.5
updated Jun 20, 2020
Resolve "Annotate peaks" 5 of 6 checklist items completed

BICF/Astrocyte/atacseq_analysis!26 · created Jun 11, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jun 11, 2020
Resolve "Blacklist of regions" 5 of 5 checklist items completed

BICF/Astrocyte/atacseq_analysis!25 · created Jun 09, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Jun 09, 2020
Resolve "Add fragment size distribution" 4 of 5 checklist items completed

BICF/Astrocyte/atacseq_analysis!24 · created Jun 02, 2020 by Venkat Malladi Version 2.0 master
enhancment
- Merged
- 3
updated Jun 09, 2020
Resolve "TSS enrichment score" 5 of 5 checklist items completed

BICF/Astrocyte/atacseq_analysis!22 · created May 28, 2020 by Venkat Malladi Version 2.0 master
enhancment
updated May 28, 2020
Develop

BICF/Astrocyte/cellranger_count!70 · created May 25, 2020 by Gervaise Henry v2.1.1 master
updated May 25, 2020
Resolve "Add FRiP score" 5 of 5 checklist items completed

BICF/Astrocyte/atacseq_analysis!20 · created May 13, 2020 by Venkat Malladi Version 2.0 master
enhancment
updated May 13, 2020
Develop 1 of 7 checklist items completed

BICF/Astrocyte/cellranger_count!67 · created Apr 20, 2020 by Gervaise Henry v2.1.1 master
updated Apr 20, 2020
Add ulimit -u to all cellranger processes 2 of 7 checklist items completed

BICF/Astrocyte/cellranger_count!66 · created Apr 20, 2020 by Gervaise Henry v2.1.1
Doing To Do bug confirmed critical
updated Apr 20, 2020
Resolve "Paired-end Diffbind peaks gives different answer" after changing random 2 of 2 checklist items completed

BICF/Astrocyte/chipseq_analysis!69 · created Apr 17, 2020 by Venkat Malladi 1.1.0 master
Test bug
updated Apr 20, 2020
Resolve "Containerize"

BICF/Astrocyte/cellranger_count!62 · created Apr 15, 2020 by Gervaise Henry v2.1.1
Doing enhancement
updated Apr 15, 2020
Resolve "Update params to current standards"

BICF/Astrocyte/cellranger_count!61 · created Apr 14, 2020 by Gervaise Henry v2.1.1
Doing enhancement
updated Apr 15, 2020
Resolve "Add 3':5' param"

BICF/Astrocyte/cellranger_count!60 · created Apr 14, 2020 by Gervaise Henry v2.1.1
Doing critical enhancement
- Merged
updated Apr 14, 2020
Add License file 2 of 2 checklist items completed

BICF/Astrocyte/atacseq_analysis!18 · created Apr 06, 2020 by Venkat Malladi Version 2.0 master
updated May 07, 2020
Resolve "Add percent of reads - mitochondria" 5 of 5 checklist items completed

BICF/Astrocyte/atacseq_analysis!16 · created Mar 24, 2020 by Holly Ruess Version 2.0 master
enhancment
- Merged
- 1
updated Mar 24, 2020
Resolve "Rename Plot profile to be consistent with naming" 4 of 4 checklist items completed

BICF/Astrocyte/chipseq_analysis!67 · created Mar 21, 2020 by Venkat Malladi 1.1.0
Test
- Merged
- 2
updated Apr 21, 2020
Update to test with new astrocyte runner. 0 of 4 checklist items completed

BICF/Astrocyte/chipseq_analysis!66 · created Mar 19, 2020 by Venkat Malladi 1.1.0 master
- Merged
- 1
updated Mar 21, 2020
Resolve "Generate MultiQC report"

BICF/Astrocyte/atacseq_analysis!15 · created Feb 25, 2020 by Holly Ruess Version 2.0 master
enhancment
updated Feb 25, 2020