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Created with Raphaël 2.2.01Nov18Mar21Oct9Jun65231May2610Apr330Mar2423221776223Feb21918Jan171028Dec206228Oct2516Sep22Aug1615Update matrix_analysis.pymastermasterUpdate matrix_analysis.pyUpdate README.mdCleaned up repository for publication.Moved extra files.analysis_outputanalysis_outputAdd in all scripts and analysis for data.Updated files.Update figure.Update percentages.Update intervene figure.Merge branch 'master' of git.biohpc.swmed.edu:venkat.malladi/pittedAdd in both marks.update colors.Add in Venndiagram.Fix hard coded value.Update Histone analysis.Update rank order.Analysis for the Histone centered matrix.Update boxplot width.Complete analysis of ranked clusters.Update code that was not previously saved.Update matrix analysis to look at TFS and clossest genes and enhancers expression.Update histone analysis.Update histone analysis.Histone centered processing.Add in overlap of enhacners.Added in rank order anaylsis, and analysis for cluster 3.Update matrix analysis for better clustering.Added analysis of looking at Cluster 3.First pass at analysis of GRO-seq centered enhancers.Updated Histone only location browswer track.Verifyed that number of enhancers is 4974.Update barplot.Update Enhancer processing.Fix name rpkm values.fix syntax.Update overlap of enhancers.Update GRO-seq enhancer processing.Update pysam to account for new syntax.Update pysam to account for new syntax.