Commits · 00dd6e2e4971ebc49243be2b3216c18ed2293d6d · GCRB / TFSEE

Mar 02, 2017
- Update pysam to account for new syntax. · 00dd6e2e
  Venkat Malladi authored 8 years ago
  
  00dd6e2e
Feb 23, 2017
- get 1kb center of enhancer ans figures. · cd3784ba
  Venkat Malladi authored 8 years ago
  
  cd3784ba
- Making 1kb center histone data. · 7010f0ea
  Venkat Malladi authored 8 years ago
  
  7010f0ea
- Update bar plot. · 8435e959
  Venkat Malladi authored 8 years ago
  
  8435e959
- fix plots. · ecec9076
  Venkat Malladi authored 8 years ago
  
  ecec9076
- fixual representation of overlap and bed files for Histone Enhancers. · 5eb1516b
  Venkat Malladi authored 8 years ago
  
  5eb1516b
Feb 21, 2017
- Overlap of enhancers plot. · c8f21f96
  Venkat Malladi authored 8 years ago
  
  c8f21f96
- Update histone centered processing. · 7a9a34d2
  Venkat Malladi authored 8 years ago
  
  7a9a34d2
- Procesing of histone centered enhancers. · 0248c449
  Venkat Malladi authored 8 years ago
  
  0248c449
Feb 09, 2017
- Add processing of cutoff of enhancer elements. · 72f3ea7d
  Venkat Malladi authored 8 years ago
  
  72f3ea7d
Jan 18, 2017
- update code. · 1fc294d0
  Venkat Malladi authored 8 years ago
  
  1fc294d0
- Add in RNA-seq processing. · efc49c07
  Venkat Malladi authored 8 years ago
  
  efc49c07
- Update code for protein coding genes tss. · 9603f55e
  Venkat Malladi authored 8 years ago
  
  9603f55e
Jan 17, 2017
- Show cutoffs for H3K4me3 and H3K27ac marks. · aff20266
  Venkat Malladi authored 8 years ago
  
  aff20266
Jan 10, 2017
- Update processing for histone data. · 905de27d
  Venkat Malladi authored 8 years ago
  
  905de27d
Dec 28, 2016
- Add in potential histone processing. · 38234440
  Venkat Malladi authored 8 years ago
  
  38234440
- Add normalized signal and gene expression. · 4770e11d
  Venkat Malladi authored 8 years ago
  
  4770e11d
Dec 20, 2016
- Update of gro-seq processing. · fcf33e4b
  Venkat Malladi authored 8 years ago
  
  fcf33e4b
Dec 06, 2016
- Update corelation. · f8d9e216
  Venkat Malladi authored 8 years ago
  
  f8d9e216
- Update the enhancers called by gro-seq. · 481e5dee
  Venkat Malladi authored 8 years ago
  
  481e5dee
Dec 02, 2016
- Update the analysis of mimumm rpkm for enhancers. · 1f1bd426
  Venkat Malladi authored 8 years ago
  
  1f1bd426
- Update H3K27ac analysis. · d27b44fc
  Venkat Malladi authored 8 years ago
  
  d27b44fc
- Update H3K4me1 analysis. · 23a3c93c
  Venkat Malladi authored 8 years ago
  
  23a3c93c
- Update h3k4me3 processing. · 0a431c06
  Venkat Malladi authored 8 years ago
  
  0a431c06
- Update the with correlation. · 90467495
  Venkat Malladi authored 8 years ago
  
  90467495
Oct 28, 2016
- Add in names. · ab842367
  Venkat Malladi authored 8 years ago
  
  ab842367
- Add dReg. · 1f7afc6a
  Venkat Malladi authored 8 years ago
  
  1f7afc6a
Oct 25, 2016
- Called enhancers for GRO-seq · 94efc47b
  Venkat Malladi authored 8 years ago
  
  94efc47b
Sep 16, 2016
- First pass at calling enhancers. · dadc70fc
  Venkat Malladi authored 8 years ago
  
  dadc70fc
Aug 22, 2016
- Add in submodules. · bb96f866
  Venkat Malladi authored 8 years ago
  
  bb96f866
Aug 16, 2016
- Call peaks for H3K4me3. · d50d6b99
  Venkat Malladi authored 8 years ago
  
  d50d6b99
- Change file name. · 43d157fc
  Venkat Malladi authored 8 years ago
  
  43d157fc
Aug 15, 2016
- First pass a keeping track of analysis for PITTED. · 6e3b1de3
  Venkat Malladi authored 8 years ago
  
  6e3b1de3