updating tags

workflow/main.nf

 #!/usr/bin/env nextflow
 	
 // Default parameter values to run tests
+
 params.pairs="pe"
 params.genome="/project/apps_database/hisat2_index/hg38/"
 params.gtf="/project/apps_database/iGenomes/Homo_sapiens/NCBI/GRCh38/Annotation/Genes.gencode/genes.gtf"
 params.design="$baseDir/../test_data/design.txt"
 params.fastqs="$baseDir/../test_data/*.fastq.gz"
 
-
 fastqs=params.fastqs
-
 design_file = file(params.design)
-
 gtf_file = file(params.gtf)
 
 // params genome is the directory
@@ -100,7 +98,7 @@ process trimpe {
   output:
   set pair_id, file("${read1.baseName.split("\\.", 2)[0]}_val_1.fq.gz"), file("${read2.baseName.split("\\.", 2)[0]}_val_2.fq.gz") into trimpe
   when:
-  param.pairs == 'pe'
+  params.pairs == 'pe'
   script:
   """
   module load trimgalore/0.4.1 cutadapt/1.9.1
@@ -113,7 +111,7 @@ process trimse {
   output:
   set pair_id, file("${read1.baseName.split("\\.", 2)[0]}_trimmed.fq.gz") into trimse
   when:
-  param.pairs == 'se'
+  params.pairs == 'se'
   script:
   """
   module load trimgalore/0.4.1 cutadapt/1.9.1