Add additional genome options.

astrocyte_pkg.yml

@@ -90,8 +90,11 @@ workflow_parameters:
   - id: index
     type: select
     choices:
+      - [ '/project/apps_database/iGenomes/Homo_sapiens/UCSC/hg38/Sequence/BWAIndex/genome.fa', 'UCSC hg38']
       - [ '/project/apps_database/iGenomes/Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/genome.fa', 'UCSC hg19']
       - [ '/project/apps_database/iGenomes/Homo_sapiens/UCSC/hg18/Sequence/BWAIndex/genome.fa', 'UCSC hg18']
+      - [ '/project/apps_database/iGenomes/Mus_musculus/UCSC/mm10/Sequence/BWAIndex/genome.fa', 'UCSC mm10']
+      - [ '/project/apps_database/iGenomes/Mus_musculus/UCSC/mm9/Sequence/BWAIndex/genome.fa', 'UCSC mm9']
     required: true
     description: |
       Reference genome for BWA alignment
@@ -115,4 +118,4 @@ vizapp_cran_packages:
 # # List of any Bioconductor packages, not provided by the modules, that must be made
 # available to the vizapp
 vizapp_bioc_packages:
-  - chipseq
+  - chipseq
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