Commits · deec64962aa0562bf85087dea0bee2b324d2e798 · Astrocyte / Workflows / Strand Lab / cellranger-count

Nov 02, 2023
- Specify location of reference genome · deec6496
  John Lafin authored 1 year ago
  
  deec6496
- Include nextflow and cellranger on PATH · d544c08a
  John Lafin authored 1 year ago
  
  d544c08a
- fix module error on VM · 9c53523c
  John Lafin authored 1 year ago
  
  9c53523c
- Run CI on Peng's runner · c7dac753
  John Lafin authored 1 year ago
  
  0.0.4-ci-5
  
  c7dac753
Oct 26, 2023
- fix reference download · cc0eec6d
  John Lafin authored 1 year ago
  
  2 tags
  
  cc0eec6d
- change ref from val to path · 897c6be2
  John Lafin authored 1 year ago
  
  897c6be2
- add get_reference process · 634dc9e0
  John Lafin authored 1 year ago
  
  634dc9e0
- move ref selection to workflow · fc6e2f14
  John Lafin authored 1 year ago
  
  fc6e2f14
Oct 19, 2023
- include /opt in path · a95ddd90
  John Lafin authored 1 year ago
  
  0.0.4-ci-3
  
  a95ddd90
- Fix PATH in CI · 782de93f
  John Lafin authored 1 year ago
  
  0.0.4-ci-2
  
  782de93f
- Set git variables · 767e938c
  John Lafin authored 1 year ago
  
  0.0.4-ci
  
  767e938c
- Update .gitlab-ci.yml file · 5f329e93
  John Lafin authored 1 year ago
  
  test_0.0.4
  
  5f329e93
- Update .gitlab-ci.yml file · 68bb7130
  John Lafin authored 1 year ago
  
  68bb7130
- update CI · a760f2bb
  John Lafin authored 1 year ago
  
  a760f2bb
- Change CI to only run on tagged commits · cdafd2c3
  John Lafin authored 1 year ago
  
  cdafd2c3
- Update .gitlab-ci.yml file · 0ade135d
  John Lafin authored 1 year ago
  
  0ade135d
- update docs · ab01634b
  John Lafin authored 1 year ago
  
  ab01634b
- check if reference exists · 1bdf04a3
  John Lafin authored 1 year ago
  
  1bdf04a3
Oct 12, 2023
- change test data to Brain_Tumor; add collect() to main · 3c9a2d3f
  John Lafin authored 1 year ago
  
  test_0.0.3
  
  3c9a2d3f
- use projectDir as input · 8dd77896
  John Lafin authored 1 year ago
  
  test_0.0.2
  
  8dd77896
Oct 05, 2023
- add logfiles and traces · 67c844ab
  John Lafin authored 1 year ago
  
  test_0.0.1
  
  67c844ab
- Include singularity as temp workaround · 81a92029
  John Lafin authored 1 year ago
  
  81a92029
- update documentation · 599970eb
  John Lafin authored 1 year ago
  
  599970eb
- remove archive after untar · e62f42b0
  John Lafin authored 1 year ago
  
  e62f42b0
- add 'required' attributes · d3c4b706
  John Lafin authored 1 year ago
  
  d3c4b706
- Update Astrocyte files and documentation · 662da40e
  John Lafin authored 1 year ago
  
  662da40e
Sep 28, 2023
- Ignore DS_Store files · 07d7fb64
  John Lafin authored 1 year ago
  
  07d7fb64
- Update main.nf to DSL2 · ca51bf8f
  John Lafin authored 1 year ago
  
  ca51bf8f
- Ignore git tracking of test data · 0f8e1e90
  John Lafin authored 1 year ago
  
  0f8e1e90
Sep 26, 2023
- Update README.md · eddb327b
  Hololens Test authored 1 year ago
  
  eddb327b
- Fix basic syntax - now needs nextflow DSL1 override · 7c3b41f8
  Hololens Test authored 1 year ago
  
  7c3b41f8
- Add quiet mode (that doesn't work) to fetch_data · 1c6d6ace
  Hololens Test authored 1 year ago
  
  1c6d6ace
Sep 21, 2023
- remove vizapp and update expectCounts · 40230ba4
  John Lafin authored 1 year ago
  
  40230ba4
- add test data default · e3c7fb07
  John Lafin authored 1 year ago
  
  e3c7fb07
- add script to fetch test data · 43448d79
  John Lafin authored 1 year ago
  
  43448d79
Sep 14, 2023
- Update files away from Wordcount · eb720ea0
  John Lafin authored 1 year ago
  
  eb720ea0
Sep 07, 2023
- Update Giblab CI · 9aa8d8f5
  Peng Lian authored 1 year ago
  
  9aa8d8f5
- Simplify Gitlab CI/CD · 24b13f74
  Peng Lian authored 1 year ago
  
  24b13f74
- Merge branch 'master' into 'master' · 01a16971
  Peng Lian authored 1 year ago
```
Add cleanlines process.

See merge request astrocyte/workflows/biohpc/astrocyte_example_wordcount!6
```
  01a16971
- Update the documentation to include the new process. · e807faa9
  Felix Perez authored 1 year ago
  
  e807faa9