Commits · 567e71801d2a6ac32d3473492cb09df205ee6eef · Astrocyte / Workflows / Strand Lab / cellranger-count

Jun 14, 2021
- [ci skip] Adding new configurations for pulling from the gitlab registry · 567e7180
  Hololens Test authored 3 years ago
  
  567e7180
Jun 11, 2021
- Merge branch 'LocalDockerRegistry' of... · 6c7d6267
  Hololens Test authored 3 years ago
```
Merge branch 'LocalDockerRegistry' of git.biohpc.swmed.edu:s190450/astrocyte_example_wordcount into LocalDockerRegistry
```
  6c7d6267
- Merge CI changes and add more parsing to the CI pipeline · 4d5ee3b9
  Hololens Test authored 3 years ago
  
  4d5ee3b9
- Move config for containers out into the config files instead of main.nf · 34827e55
  Hololens Test authored 3 years ago
  
  34827e55
- Update .gitlab-ci.yml file · 2033a84f
  Hololens Test authored 3 years ago
  
  2033a84f
- Update .gitlab-ci.yml file · 67bc14f5
  Hololens Test authored 3 years ago
  
  67bc14f5
Jun 10, 2021
- Update runner tags to restrict to a particular branch · d0e7a849
  Hololens Test authored 3 years ago
  
  d0e7a849
Jun 09, 2021
- Merge commit 'da98f976 ' into LocalDockerRegistry · f3f04e45
  Hololens Test authored 3 years ago
  
  f3f04e45
- Fix ownership for files created by docker process, see if that fixes the... · da98f976
  Hololens Test authored 3 years ago
```
Fix ownership for files created by docker process, see if that fixes the non-appearing files in the workflow.
```
  da98f976
- Change astrocyte run to quiet instead of background to see if tests after that line succeed. · 2b6c7ee1
  Hololens Test authored 3 years ago
  
  2b6c7ee1
- Fix CI lint issues, use escaped colon sequence \x3A · c55c2e38
  Hololens Test authored 3 years ago
  
  c55c2e38
- Switchable configs for astrocyte_pkg.yml runs of astrocyte. · 4b4cc7a7
  Hololens Test authored 3 years ago
  
  4b4cc7a7
Jun 08, 2021
- Test running instead of testing with astrocyte_cli · 50489b22
  Hololens Test authored 3 years ago
  
  50489b22
- Update astrocyte_cli to take Options, remove NXF_DEBUG · 62d6a335
  Hololens Test authored 3 years ago
  
  62d6a335
- Fixed nextflow flags, removed astrocyte_cli verbosity · cbe7e6e4
  Hololens Test authored 3 years ago
  
  cbe7e6e4
- Add background processing for the Nextflow stages, as they otherwise stall with SIGTTOU · 199723ff
  Hololens Test authored 3 years ago
  
  199723ff
Jun 07, 2021
- Modify git strategy to always clone · acf301a1
  Hololens Test authored 3 years ago
  
  acf301a1
- Preserve artifacts for various nextflow runs. · eb877144
  Hololens Test authored 3 years ago
  
  eb877144
- Modify main.nf with instrumentation, remove params flag from astrocyte_cli · 7b8661ac
  Hololens Test authored 3 years ago
  
  7b8661ac
- Verbose astrocyte passthrough to nextflow · 44661ac3
  Hololens Test authored 3 years ago
  
  44661ac3
- Test step-dependent nextflow configs. · 98e548ff
  Hololens Test authored 3 years ago
  
  98e548ff
- Added nextflow debugging to the gitlab-ci · 27dfa945
  Hololens Test authored 3 years ago
  
  27dfa945
Jun 04, 2021
- Update .gitlab-ci.yml · dea9d7a4
  Hololens Test authored 3 years ago
  
  dea9d7a4
- Update .gitlab-ci.yml · 440b6ad1
  Hololens Test authored 3 years ago
  
  440b6ad1
- Update .gitlab-ci.yml · 307235d2
  Hololens Test authored 3 years ago
  
  307235d2
- Update .gitlab-ci.yml · 3de80f06
  Hololens Test authored 3 years ago
  
  3de80f06
Jun 01, 2021
- Test extension of gitlab · c5b25d04
  Hololens Test authored 3 years ago
  
  c5b25d04
- Reorganize the structure of the images folders · facd08aa
  Peng Lian authored 3 years ago
  
  facd08aa
- Add the images folder · 1029b141
  Peng Lian authored 3 years ago
  
  1029b141
- Run with Singularity container · 4c1b2f4e
  Peng Lian authored 3 years ago
  
  4c1b2f4e
Aug 27, 2020
- Add citation label · ab1b655e
  PLian authored 4 years ago
  
  ab1b655e
Aug 26, 2020
- Change 'astrocyte_version' to 'minimum_astrocyte_version' in the yaml file · f5f17144
  PLian authored 4 years ago
  
  f5f17144
Aug 17, 2020
- Update yaml file · 0bbe0bf3
  PLian authored 4 years ago
  
  0bbe0bf3
Aug 13, 2020
- Add support for Astrocyte 0.4.0 · 416472ba
  PLian authored 4 years ago
  
  416472ba
Apr 11, 2019
- Add dummy examples of parameter types · c2938fbe
  David Trudgian authored 5 years ago
  
  c2938fbe
Feb 04, 2019
- Merge branch 'updateR' into 'master' · d1fef9ea
  David Trudgian authored 6 years ago
```
Bump R for vizapp, add some commented features to metadata file

See merge request biohpc/astrocyte_example_wordcount!2
```
  d1fef9ea
- Bump R for vizapp, add some commented features to metadata file · f7bca102
  David Trudgian authored 6 years ago
  
  f7bca102
- Merge branch 'CI' into 'master' · 65bc885d
  David Trudgian authored 6 years ago
```
Add Basic CI

See merge request biohpc/astrocyte_example_wordcount!1
```
  65bc885d
- CI stages · 5b05ac28
  David Trudgian authored 6 years ago
  
  5b05ac28
- Basic CI · 984fde40
  David Trudgian authored 6 years ago
  
  984fde40