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Commit 2c1184b4 authored by John Lafin's avatar John Lafin
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Check CI on VM

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.gitlab-ci.yml
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...@@ -34,7 +34,7 @@ download-test-data: # Download the test data if missing ...@@ -34,7 +34,7 @@ download-test-data: # Download the test data if missing
test-cr-count: # Run cellranger count on the test data test-cr-count: # Run cellranger count on the test data
stage: test stage: test
script: script:
- nextflow run workflow/main.nf --reference=/home/strand_admin/ref/refdata-gex-GRCh38-2020-A # Necessary to run on VM - nextflow run workflow/main.nf --reference=/home/strand_admin/ref/refdata-gex-GRCh38-2020-A --noBam=true # Necessary to run on VM; skip bam generation
#- module load nextflow/22.04.5 # Necessary to run on astrocyte #- module load nextflow/22.04.5 # Necessary to run on astrocyte
- nextflow run workflow/main.nf #- nextflow run workflow/main.nf
- nextflow clean -keep-logs - nextflow clean -keep-logs
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