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Astrocyte
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Strand Lab
cellranger-count
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1e6bce5c
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1e6bce5c
authored
1 year ago
by
John Lafin
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Add -f to nf clean
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@@ -37,4 +37,4 @@ test-cr-count: # Run cellranger count on the test data
...
@@ -37,4 +37,4 @@ test-cr-count: # Run cellranger count on the test data
-
nextflow run workflow/main.nf --reference=/home/strand_admin/ref/refdata-gex-GRCh38-2020-A --noBam=true
# Necessary to run on VM; skip bam generation
-
nextflow run workflow/main.nf --reference=/home/strand_admin/ref/refdata-gex-GRCh38-2020-A --noBam=true
# Necessary to run on VM; skip bam generation
#- module load nextflow/22.04.5 # Necessary to run on astrocyte
#- module load nextflow/22.04.5 # Necessary to run on astrocyte
#- nextflow run workflow/main.nf
#- nextflow run workflow/main.nf
-
nextflow clean -keep-logs
-
nextflow clean
-f
-keep-logs
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