Skip to content
Snippets Groups Projects
README.md 1004 B
Newer Older
# Example Wordcount Package
David Trudgian's avatar
David Trudgian committed

David Trudgian's avatar
David Trudgian committed
[![Build
Status](https://git.biohpc.swmed.edu/BioHPC/astrocyte_example_wordcount/badges/master/build.svg)](https://git.biohpc.swmed.edu/BioHPC/astrocyte_example_wordcount/commits/master)
[![Astrocyte](https://img.shields.io/badge/astrocyte-%E2%89%A50.1.0-blue.svg)](https://astrocyte-test.biohpc.swmed.edu/static/docs/index.html)

This is an example workflow package for astrocyte. It contains a worfklow
to count the occurences of each word in a text file.

## The Workflow

The workflow `workflow/main.nf` has three processes:

  - Convert all the text in the input files to uppercase
  - Split the text so each word is on a separate line
  - Sort, find and count the occurence of unique words

## Parameters

There is a single parameter `story`. This provides 1 or more files that the
workflow should run on.

## Questions

If you have any questions about this workflow example, or Astrocyte in general,
please contact the BioHPC team via biohpc-help@utsouthwestern.edu