biohpc_singularity_gitlab.config

singularity {
  enabled = true
  runOptions = '--disable-cache'                                // use this one for production
  // runOptions = '--disable-cache --bind /vagrant:/vagrant'    // use this one for vagrant development env only
  cacheDir = "$baseDir/images/singularity"
}


process {
    executor = 'local'
    withName:parameters {
        container = 'git.biohpc.swmed.edu:5050/biohpc/astrocyte_example_wordcount/ubuntu:latest'
    }
    withName:uppercase {
        container = 'docker://git.biohpc.swmed.edu:5050/biohpc/astrocyte_example_wordcount/ubuntu:latest'
    }
    withName:tolines {
        container = 'docker://git.biohpc.swmed.edu:5050/biohpc/astrocyte_example_wordcount/ubuntu:latest'
    }
    withName:wordcounts {
        container = 'docker://git.biohpc.swmed.edu:5050/biohpc/astrocyte_example_wordcount/centos:centos8'
    }
}