biohpc_singularity_gitlab.config

singularity {
  enabled = true
  runOptions = '--bind /vagrant:/vagrant'
  cacheDir = "$baseDir/images/singularity"
}


process {
    executor = 'local'
    withName:parameters {
        container = 'git.biohpc.swmed.edu:5050/biohpc/astrocyte_example_wordcount/ubuntu:latest'
    }
    withName:uppercase {
        container = 'docker://git.biohpc.swmed.edu:5050/biohpc/astrocyte_example_wordcount/ubuntu:latest'
    }
    withName:tolines {
        container = 'docker://git.biohpc.swmed.edu:5050/biohpc/astrocyte_example_wordcount/ubuntu:latest'
    }
    withName:wordcounts {
        container = 'docker://git.biohpc.swmed.edu:5050/biohpc/astrocyte_example_wordcount/centos:centos8'
    }
}