.gitignore

README.md

atacseq/.github/.dockstore.yml

atacseq/.github/CONTRIBUTING.md

atacseq/.github/ISSUE_TEMPLATE/bug_report.yml

atacseq/.github/ISSUE_TEMPLATE/config.yml

atacseq/.github/ISSUE_TEMPLATE/feature_request.yml

atacseq/.github/PULL_REQUEST_TEMPLATE.md

atacseq/.github/workflows/awsfulltest.yml

atacseq/.github/workflows/awstest.yml

atacseq/.github/workflows/branch.yml

atacseq/.github/workflows/ci.yml

atacseq/.github/workflows/clean-up.yml

atacseq/.github/workflows/fix-linting.yml

atacseq/.github/workflows/linting.yml

atacseq/.github/workflows/linting_comment.yml

atacseq/assets/adaptivecard.json

atacseq/assets/bamtools_filter_pe.json

atacseq/assets/bamtools_filter_se.json

atacseq/assets/blacklists/old/GRCm38-blacklist.bed