atacseq/.devcontainer/devcontainer.json

atacseq/lib/NfcoreTemplate.groovy

atacseq/lib/Utils.groovy

atacseq/lib/WorkflowAtacseq.groovy

atacseq/lib/WorkflowMain.groovy

atacseq/lib/nfcore_external_java_deps.jar

atacseq/modules/local/bam_remove_orphans.nf

atacseq/modules/local/bamtools_filter.nf

atacseq/modules/local/bedtools_genomecov.nf

atacseq/modules/local/deseq2_qc.nf

atacseq/modules/local/frip_score.nf

atacseq/modules/local/genome_blacklist_regions.nf

atacseq/modules/local/get_autosomes.nf

atacseq/modules/local/gtf2bed.nf

atacseq/modules/local/igv.nf

atacseq/modules/local/macs2_consensus.nf

atacseq/modules/local/multiqc.nf

atacseq/modules/local/multiqc_custom_peaks.nf

atacseq/modules/local/plot_homer_annotatepeaks.nf

atacseq/modules/local/plot_macs2_qc.nf