Add ENCODE team's atac-seq pipeline (v2.2.2)
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- LICENSE 21 additions, 0 deletionsLICENSE
- README.md 146 additions, 59 deletionsREADME.md
- atac.croo.v5.json 824 additions, 0 deletionsatac.croo.v5.json
- atac.wdl 3024 additions, 0 deletionsatac.wdl
- dev/build_on_dx_dockerhub.sh 60 additions, 0 deletionsdev/build_on_dx_dockerhub.sh
- dev/docker_image/Dockerfile 146 additions, 0 deletionsdev/docker_image/Dockerfile
- dev/docker_image/mysql/init_user.sql 4 additions, 0 deletionsdev/docker_image/mysql/init_user.sql
- dev/example_input_json/aws/ENCSR356KRQ_subsampled_aws.json 33 additions, 0 deletionsdev/example_input_json/aws/ENCSR356KRQ_subsampled_aws.json
- dev/example_input_json/caper/ENCSR356KRQ_subsampled_caper.json 33 additions, 0 deletions...xample_input_json/caper/ENCSR356KRQ_subsampled_caper.json
- dev/example_input_json/gcp/ENCSR356KRQ_subsampled_gcp.json 33 additions, 0 deletionsdev/example_input_json/gcp/ENCSR356KRQ_subsampled_gcp.json
- dev/example_input_json/klab/ENCSR356KRQ_klab.json 33 additions, 0 deletionsdev/example_input_json/klab/ENCSR356KRQ_klab.json
- dev/example_input_json/klab/ENCSR356KRQ_subsampled_klab.json 33 additions, 0 deletionsdev/example_input_json/klab/ENCSR356KRQ_subsampled_klab.json
- dev/example_input_json/klab/ENCSR356KRQ_subsampled_start_from_bam_klab.json 14 additions, 0 deletions...json/klab/ENCSR356KRQ_subsampled_start_from_bam_klab.json
- dev/example_input_json/klab/ENCSR889WQX_subsampled_klab.json 20 additions, 0 deletionsdev/example_input_json/klab/ENCSR889WQX_subsampled_klab.json
- dev/example_input_json/scg/ENCSR356KRQ_subsampled_scg.json 33 additions, 0 deletionsdev/example_input_json/scg/ENCSR356KRQ_subsampled_scg.json
- dev/example_input_json/sherlock/ENCSR356KRQ_subsampled_sherlock.json 33 additions, 0 deletions..._input_json/sherlock/ENCSR356KRQ_subsampled_sherlock.json
- dev/test/README.md 99 additions, 0 deletionsdev/test/README.md
- dev/test/run_cromwell_server_on_gc.sh 15 additions, 0 deletionsdev/test/run_cromwell_server_on_gc.sh
- dev/test/test_py/__init__.py 0 additions, 0 deletionsdev/test/test_py/__init__.py
- dev/test/test_task/.gitignore 9 additions, 0 deletionsdev/test/test_task/.gitignore
LICENSE
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atac.croo.v5.json
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atac.wdl
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dev/build_on_dx_dockerhub.sh
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dev/docker_image/Dockerfile
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dev/docker_image/mysql/init_user.sql
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dev/test/README.md
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dev/test/run_cromwell_server_on_gc.sh
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dev/test/test_py/__init__.py
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dev/test/test_task/.gitignore
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