Merge branch 'updateR' into 'master'

Bump R for vizapp, add some commented features to metadata file

See merge request biohpc/astrocyte_example_wordcount!2

astrocyte_pkg.yml

@@ -50,12 +50,13 @@ workflow_modules:
 # REQUIRED INFORMATION
 #  id:         The name of the parameter in the NEXTFLOW workflow
 #  type:       The type of the parameter, one of:
-#                string    - A free-format string
-#                integer   - An integer
-#                real      - A real number
-#                file      - A single file from user data
-#                files     - One or more files from user data
-#                select    - A selection from a list of values
+#                string      - A free-format string
+#                integer     - An integer
+#                real        - A real number
+#                file        - A single file from user data
+#                files       - One or more files from user data
+#                select      - A selection from a list of values
+#                multiselect - One or more selections from a list of values
 #  required:    true/false, must the parameter be entered/chosen?
 #  description: A user friendly description of the meaning of the parameter
 #
@@ -96,7 +97,7 @@ workflow_parameters:
 #            The workflow must publish all final output into $baseDir
 
 # Name of the R module that the vizapp will run against
-vizapp_r_module: 'R/3.2.1-intel'
+vizapp_r_module: 'R/3.4.1-gccmkl'
 
 # List of any CRAN packages, not provided by the modules, that must be made
 # available to the vizapp
@@ -107,4 +108,13 @@ vizapp_cran_packages:
 # # List of any Bioconductor packages, not provided by the modules, that must be made
 # available to the vizapp
 vizapp_bioc_packages:
-  - chipseq
+  -
+
+# # List of any packages to install from GitHub using devtools, that must be
+# made availavle to the vizapp
+vizapp_github_packages:
+  -
+
+
+
+