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Commit 3e4b12b9 authored by Hololens Test's avatar Hololens Test
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Update main.nf and biohpc_singularity_gitlab.config to use correct container invoke

parent 9af5bb5a
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1 merge request!3Merge new CI pipeline with the changes from Peng.
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workflow/configs/biohpc_singularity_gitlab.config
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...@@ -7,6 +7,9 @@ docker { ...@@ -7,6 +7,9 @@ docker {
process { process {
executor = 'local' executor = 'local'
withName:parameters {
container = 'git.biohpc.swmed.edu:5050/s190450/astrocyte_example_wordcount/ubuntu:latest'
}
withName:uppercase { withName:uppercase {
container = 'git.biohpc.swmed.edu:5050/s190450/astrocyte_example_wordcount/ubuntu:latest' container = 'git.biohpc.swmed.edu:5050/s190450/astrocyte_example_wordcount/ubuntu:latest'
} }
......
workflow/main.nf
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View file @ 3e4b12b9
...@@ -27,7 +27,7 @@ stories = Channel.fromPath( params.story ) ...@@ -27,7 +27,7 @@ stories = Channel.fromPath( params.story )
process parameters { process parameters {
cpus 1 cpus 1
container 'ubuntu:latest' //container 'ubuntu:latest'
""" """
echo "Test Parameters Provided..." echo "Test Parameters Provided..."
......
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