Update R and Singularity

.gitignore

@@ -7,3 +7,5 @@ workflow/*.csv
 *.img
 *.txt
 *.wordcount
+.nextflow/
+.rlibrary/

astrocyte_pkg.yml

@@ -16,7 +16,7 @@ email: 'biohpc-help@utsouthwestern.edu'
 title: 'Example Wordcount Workflow'
 # A summary of the workflow package in plain text
 description: |
-  Fully containerized version, runs with BioHPC registry and slurm.
+  Fully containerized, runs with Astrocyte/2.0.0, BioHPC registry, and SLURM.
 
 #### New Features in Astrocyte 0.4.0 and above ####
 citation: |
@@ -37,7 +37,7 @@ nextflow_config: 'biohpc.config'
 # The container to use for this workflow, none/singularity. If omitted, the default value 'none' will be used.
 container: 'singularity'
 # The version of singularity to use. This is required if container == 'singularity'
-singularity_version: '3.5.3'
+singularity_version: '3.9.9'
 
 # -----------------------------------------------------------------------------
 # DOCUMENTATION
@@ -172,14 +172,14 @@ workflow_parameters:
 
 # Name of the R module that the vizapp will run against
 # A containerized version is recommended.
-vizapp_r_module: 'R/4.1.1-img'
+vizapp_r_module: 'R/4.2.2-img'
 
 # List of any CRAN packages, not provided by the modules, that must be made
 # available to the vizapp
 vizapp_cran_packages:
   - shiny
   - shinyFiles
-  - plotly 
+  - plotly
     
 # # List of any Bioconductor packages, not provided by the modules, that must be made
 # available to the vizapp