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Astrocyte
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BioHPC
astrocyte_example_chipseq
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4ee0a497
Commit
4ee0a497
authored
1 year ago
by
Peng Lian
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Update CI/CD, update to astrocyte 2.0.1
parent
b38a6ca8
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publish_1.0.0
test_1.0.0
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.gitlab-ci.yml
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.gitlab-ci.yml
README.md
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README.md
astrocyte_pkg.yml
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astrocyte_pkg.yml
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.gitlab-ci.yml
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# Run our tests against a specific version of astrocyte
before_script
:
-
module load astrocyte/2.0.
0
-
module load astrocyte/2.0.
1
stages
:
-
check
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README.md
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@@ -2,7 +2,7 @@
[

](https://git.biohpc.swmed.edu/BioHPC/astrocyte_example_chipseq/commits/master)
[

](https://astrocyte-test.biohpc.swmed.edu/static/docs/index.html)
[

](https://astrocyte-test.biohpc.swmed.edu/static/docs/index.html)
This is an example workflow package for the BioHPC Astrocyte workflow engine.
Astrocyte is a system allowing workflows to be run easily from the web in a
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astrocyte_pkg.yml
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@@ -17,11 +17,11 @@ title: 'Astrocyte Example ChIPSeq Workflow'
# A summary of the workflow package in plain text
description
:
|
This is an example workflow package that implements a simple ChIPSeq analysis workflow using BWA and MACS, plus a
simple R Shiny visualization application. Run with Astrocyte/2.0.
0
and newer.
simple R Shiny visualization application. Run with Astrocyte/2.0.
1
and newer.
# The minimum Astrocyte version that requires to run this workflow. For old pipelines, which do not have this label
# a default value of 0.3.1 will be assigned automatically. A request of minimum version less than 0.4.0 will be ignored.
minimum_astrocyte_version
:
'
2.0.
0
'
minimum_astrocyte_version
:
'
2.0.
1
'
# The Nextflow version that requires to run this workflow. For old pipelines, which do not have this label
# a default value of 0.31.0 will be assigned automatically. Please make sure the requested nextflow version is available
# in the module list.
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