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Commit ff48f141 authored by Peng Lian's avatar Peng Lian
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Bugfix in rnasequalign.sh

parent 7c9cb1b2
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......@@ -91,7 +91,7 @@ fi
idx="${index_path}/genome"
if [[ -d ${index_path}/hisat_index ]]
then
idx ="${index_path}/hisat_index/genome"
idx="${index_path}/hisat_index/genome"
fi
hisat2 -p $NPROC --rg-id ${pair_id} --rg LB:tx --rg PL:illumina --rg PU:barcode --rg SM:${pair_id} --dta -x ${idx} $hisat_opt -S out.sam --summary-file ${pair_id}.alignerout.txt
......
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