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Created with Raphaël 2.2.029Jul28221917161015May28Jul272516Aug76431Jul26Jun22211923Apr2221201716151328Mar272625242321201916152129Feb262418161512111028Jan26Sep171612316Aug141286131Jul3026252423221918171615121110983231May302928241716151465229Apr2623222120191817161520Mar1917161514131211109875Feb31Jan2522191815141312111098765427Dec26252417162Nov131Oct14Aug1311226Jul252429Jun2726258May16Mar1515Feb1413Jan121110529Nov21201918171615141031Oct30292827Uncommented nextflow_version in astrocyte_pkg.ymlUse 256 queue only for trim reads step to avoid samtools call in map_reads.py:wqAdd missing port number to container image tags.Rewrite container image references in the workflow config files to use the official container registry.Merge branch 'containerized' into 'containerized'Added new Docker file for motif search (named meme-5.5.4) installed from source, with all the necessary changes to use the new container for motif search. Updated the command line arguments for meme-chip to use v5.x syntax.Merge branch 'containerized' of git.biohpc.swmed.edu:s219741/chipseq-analysis-containerized into containerizedFP push final changes to repo before moving.Update base image tag in Dockerfiles.Push in-development containerized workflowUpdate nextflow compatible version91-update-nf-to…91-update-nf-tower-tokenRevert nextflowUpdate nextflow versionUpdate nextflow versionUpdate nextflow versionFix tokenUpdate nextflow.configUpdate python testing versionsAdd in changes. Fix version Update workspaceIDUpdate nextflow versionUpdate nextflow.config with access tokenMerge branch 'dev' into 'master'publish_1.1.3publish_1.1.3get ready for release.noCidnoCidMerge branch 'issue3087-annotation_fix' into 'dev'add missing design file for se single controldownsampled_fas…downsampled_fastqsfix typo in gitlab ymladd down sampled fastq files for quick testingupdate peak annotation pytestadd test to ensure symbol column of peak annotation is not emptyfix peak annotation r scriptMerge branch '84-astrocyte-upgrade' into 'dev'Link to general doi.Add in 0.3.1. support for astrocyte.Update reference and version.publish_1.1.2publish_1.1.2Merge branch '84-tracking' into 'dev'Add in pipelinetracking.Update to 1.1.1.publish_1.1.1publish_1.1.1Fix change log.