Commits · d30034271e19b408cfb8530e7c0048bbc8609f35 · Astrocyte / Workflows / BICF / chipseq_analysis

Jan 11, 2019
- Fix array rename. · d3003427
  Venkat Malladi authored 6 years ago
  
  d3003427
- Fix trim reads input. · fac677c3
  Venkat Malladi authored 6 years ago
  
  fac677c3
Jan 10, 2019
- Make csv to tsv. · ad8a4c25
  Venkat Malladi authored 6 years ago
  
  ad8a4c25
- reduce to one page. · 29ea563e
  Venkat Malladi authored 6 years ago
  
  29ea563e
Jan 06, 2019
- Update R script output. · 1f604a6a
  Venkat Malladi authored 6 years ago
  
  1f604a6a
- Fix names in motif search and adding summits files. · db7110cb
  Venkat Malladi authored 6 years ago
  
  db7110cb
- Add summits and remove extra names in files. · e1f7f61b
  Venkat Malladi authored 6 years ago
  
  e1f7f61b
- Shorten and update file names. · fbec8738
  Venkat Malladi authored 6 years ago
  
  fbec8738
- Shorten and update file names. · 7db1f905
  Venkat Malladi authored 6 years ago
  
  7db1f905
- Update cross correlation filenames to be shorter. · 487b307d
  Venkat Malladi authored 6 years ago
  
  487b307d
- Change sample names for convert reads. · f760c6df
  Venkat Malladi authored 6 years ago
  
  f760c6df
- Update file names and output for filter reads. · cf00e0e5
  Venkat Malladi authored 6 years ago
  
  cf00e0e5
- fix missing genome params and annotate peaks syntax. · cde5c10a
  Venkat Malladi authored 6 years ago
  
  cde5c10a
- Update mapped reads with sample id. · 4c3add75
  Venkat Malladi authored 6 years ago
  
  4c3add75
- Add test for sample and experiment id conformance. · b1c3fb87
  Venkat Malladi authored 6 years ago
  
  b1c3fb87
- Change fastq's to be new sample names as defined by the sample_id. · cec86acd
  Venkat Malladi authored 6 years ago
  
  cec86acd
- Change output of diffPeaks design file. · 83e1537d
  Venkat Malladi authored 6 years ago
  
  83e1537d
Jan 05, 2019
- Change to int for fragment length. · 06b65b68
  Venkat Malladi authored 6 years ago
  
  06b65b68
- Add in extension to other functions. · 9d874ea1
  Venkat Malladi authored 6 years ago
  
  9d874ea1
Jan 04, 2019
- Defaulted to zcat instead of unzip file. · de67f536
  Venkat Malladi authored 6 years ago
```
(cherry picked from commit ec737360)
```
  de67f536
- Fix paried-end quality output. · aa505047
  Venkat Malladi authored 6 years ago
  
  aa505047
- remove annotate peak vennpie and update test. · afa3bbee
  Venkat Malladi authored 6 years ago
  
  afa3bbee
Dec 27, 2018
- Fix motif search and limit number of peaks. · 813fb41d
  Venkat Malladi authored 6 years ago
  
  813fb41d
Dec 26, 2018
- Update script name, R version and end result. · 6f6aa9d5
  Venkat Malladi authored 6 years ago
  
  6f6aa9d5
- Fix program description. · 954ecd5f
  Venkat Malladi authored 6 years ago
  
  954ecd5f
- Change R version and output. · e7b72cfb
  Venkat Malladi authored 6 years ago
  
  e7b72cfb
Dec 25, 2018
- Fix our file name · 0f2a8f86
  Venkat Malladi authored 6 years ago
  
  0f2a8f86
- Termite annodb · 931b9086
  Venkat Malladi authored 6 years ago
  
  931b9086
Dec 24, 2018
- Add missing libraries · 16b629be
  Venkat Malladi authored 6 years ago
  
  16b629be
- Test annotate peaks. · ea9dc8e6
  Venkat Malladi authored 6 years ago
  
  ea9dc8e6
Dec 17, 2018
- Defaulted to zcat instead of unzip file. · ec737360
  Venkat Malladi authored 6 years ago
  
  ec737360
Dec 16, 2018
- Update motif search scripts to meet new python standards · e2f0afca
  Venkat Malladi authored 6 years ago
  
  e2f0afca
Nov 01, 2018
- Add missing deeptools script. · 2cdebf21
  Venkat Malladi authored 6 years ago
  
  publish_0.0.16
  
  2cdebf21
Aug 14, 2018
- Fix syntax and readlines. · 6a2d842c
  Venkat Malladi authored 6 years ago
  
  6a2d842c
Aug 11, 2018
- Fix library issues for R. · 0e768b53
  Venkat Malladi authored 6 years ago
  
  0e768b53
Jul 25, 2018
- add in motif search. · 5198436d
  Venkat Malladi authored 6 years ago
  
  5198436d
Jul 24, 2018
- Covert csv to tsv. · 65bc6b76
  Venkat Malladi authored 6 years ago
  
  65bc6b76
- Add in differntial binding peaks. · 7b67dda5
  Venkat Malladi authored 6 years ago
  
  7b67dda5
- Update annotation script. · 7deea97e
  Venkat Malladi authored 6 years ago
  
  7deea97e
Jun 27, 2018
- Fix paired end. · 87f90708
  Venkat Malladi authored 6 years ago
  
  87f90708