Commits · b242be871cd109aace8a9523918568b91de2c4dd · Astrocyte / Workflows / BICF / chipseq_analysis

Jan 06, 2019
- Merge branch '25_pairedend_QC' into 'master' · b242be87
  Venkat Malladi authored 6 years ago
```
25 pairedend qc

See merge request BICF/Astrocyte/chipseq_analysis!15
```
  b242be87
Jan 05, 2019
- Add in test to see if output exists. · fb1633a3
  Venkat Malladi authored 6 years ago
  
  fb1633a3
- Change to int for fragment length. · 06b65b68
  Venkat Malladi authored 6 years ago
  
  06b65b68
- Add in extension to other functions. · 9d874ea1
  Venkat Malladi authored 6 years ago
  
  9d874ea1
Jan 04, 2019
- Defaulted to zcat instead of unzip file. · de67f536
  Venkat Malladi authored 6 years ago
```
(cherry picked from commit ec737360)
```
  de67f536
- Fix paried-end quality output options. · 74e367c1
  Venkat Malladi authored 6 years ago
  
  74e367c1
- Fix paried-end quality output. · aa505047
  Venkat Malladi authored 6 years ago
  
  aa505047
Nov 02, 2018
- Rever changes. · 7b165eab
  Venkat Malladi authored 6 years ago
  
  7b165eab
Nov 01, 2018
- Add missing deeptools script. · 2cdebf21
  Venkat Malladi authored 6 years ago
  
  publish_0.0.16
  
  2cdebf21
- Fix Beibei's version of pipeline. · c011b6a1
  Venkat Malladi authored 6 years ago
  
  publish_0.0.15
  
  c011b6a1
Oct 31, 2018
- Revert changes. · df14067f
  Venkat Malladi authored 6 years ago
  
  df14067f
- Add in old main.nf to fix organism in chipseeker. · bb5a6702
  Venkat Malladi authored 6 years ago
  
  publish_0.0.14
  
  bb5a6702
Aug 02, 2018
- Merge branch '18_Samtools_Update' into 'master' · 6a418e0f
  Venkat Malladi authored 6 years ago
```
updated all processes to use samtools/1.6

See merge request !14
```
  6a418e0f
Jul 26, 2018
- updated all processes to use samtools/1.6 · 98315769
  Jonathan Gesell authored 6 years ago
  
  98315769
Jun 29, 2018
- Update biohpc.config to deal with queue · a52d2a8c
  Venkat Malladi authored 6 years ago
  
  publish_0.0.13
  
  a52d2a8c
Jun 27, 2018
- Fix paired end. · 87f90708
  Venkat Malladi authored 6 years ago
  
  87f90708
- Change type to float. · da44c298
  Venkat Malladi authored 6 years ago
  
  da44c298
- Fix cutoff ratio as int. · eb004add
  Venkat Malladi authored 6 years ago
  
  eb004add
Jun 26, 2018
- Fix str in pool step. · d1037a81
  Venkat Malladi authored 6 years ago
  
  d1037a81
Jun 25, 2018
- Fix paired end issu.e · cf75becc
  Venkat Malladi authored 6 years ago
  
  cf75becc
- Expire in 2 days. · 3a5fbf2c
  Venkat Malladi authored 6 years ago
  
  3a5fbf2c
Mar 16, 2018
- Update config to use executor instead of cpu in config file. · 55c0d935
  Venkat Malladi authored 7 years ago
  
  55c0d935
Mar 15, 2018
- Fix error in config not quoted varaible · 912cae35
  Venkat Malladi authored 7 years ago
  
  912cae35
- Remove config · 707b9e36
  Venkat Malladi authored 7 years ago
  
  707b9e36
- Fix config. · 928b56da
  Venkat Malladi authored 7 years ago
  
  928b56da
- Update nextflow version and reports. · a32a7b3a
  Venkat Malladi authored 7 years ago
  
  a32a7b3a
Feb 15, 2018
- Update to include astrocyte. · e6431802
  Venkat Malladi authored 7 years ago
  
  e6431802
- Fix path. · 14a10061
  Venkat Malladi authored 7 years ago
  
  14a10061
- Update readme and add in coverage. · c6c647d8
  Venkat Malladi authored 7 years ago
  
  c6c647d8
Feb 14, 2018
- Add in paired-end data test. · 9783455d
  Venkat Malladi authored 7 years ago
  
  9783455d
- Fix acceptance test to integration tests. · 5b44e9ab
  Venkat Malladi authored 7 years ago
  
  5b44e9ab
- Fix typo. · 32977563
  Venkat Malladi authored 7 years ago
  
  32977563
- Update testing setup. · bad714b4
  Venkat Malladi authored 7 years ago
  
  bad714b4
Jan 13, 2018
- Add in convert reads. · f5b86f8f
  Venkat Malladi authored 7 years ago
  
  f5b86f8f
- Fix call to check output. · c46ecd9b
  Venkat Malladi authored 7 years ago
  
  c46ecd9b
Jan 12, 2018
- Fix map qc for paired-end data. · d03b78fc
  Venkat Malladi authored 7 years ago
  
  d03b78fc
Jan 11, 2018
- Fix test. · 28d2cd11
  Venkat Malladi authored 7 years ago
  
  28d2cd11
Jan 10, 2018
- Fix control file path. · 56623415
  Venkat Malladi authored 7 years ago
  
  56623415
- Fix single replicate issue. · 481f6287
  Venkat Malladi authored 7 years ago
  
  481f6287
Jan 05, 2018
- Fix error if only a single replciate control used. · e991c627
  Venkat Malladi authored 7 years ago
  
  e991c627