Commits · ac16a48eac1768a435cfcd2fdbc7998ad3c469f1 · Astrocyte / Workflows / BICF / chipseq_analysis

Jan 06, 2019
- Remove test code. · ac16a48e
  Venkat Malladi authored 6 years ago
  
  ac16a48e
- Change output of diffPeaks design file. · 83e1537d
  Venkat Malladi authored 6 years ago
  
  83e1537d
Jan 05, 2019
- Test for new unique experiment determination. · 4a27bcf5
  Venkat Malladi authored 6 years ago
  
  4a27bcf5
- Change order of process. Made diffPeaks a when opperative. · 92096435
  Venkat Malladi authored 6 years ago
  
  92096435
- Change test lenght of output. · 6b3c190b
  Venkat Malladi authored 6 years ago
  
  6b3c190b
Jan 04, 2019
- remove annotate peak vennpie and update test. · afa3bbee
  Venkat Malladi authored 6 years ago
  
  afa3bbee
- Fix memechip output directoires. · 673c0718
  Venkat Malladi authored 6 years ago
  
  673c0718
Dec 27, 2018
- Fix merge conflicts. · 6ed06727
  Venkat Malladi authored 6 years ago
  
  6ed06727
- Add test for motif search output. · 1a61363d
  Venkat Malladi authored 6 years ago
  
  1a61363d
- Check differential peaks. · d84a3b62
  Venkat Malladi authored 6 years ago
  
  d84a3b62
- Remove testing design string. · eea9ab16
  Venkat Malladi authored 6 years ago
  
  eea9ab16
- Fix tests so they run on single end and paired end. · c508559b
  Venkat Malladi authored 6 years ago
  
  c508559b
- Fix motif search and limit number of peaks. · 813fb41d
  Venkat Malladi authored 6 years ago
  
  813fb41d
Dec 26, 2018
- Remove output and rename touched files. · 6de1721c
  Venkat Malladi authored 6 years ago
  
  6de1721c
- Update script name, R version and end result. · 6f6aa9d5
  Venkat Malladi authored 6 years ago
  
  6f6aa9d5
- Fix program description. · 954ecd5f
  Venkat Malladi authored 6 years ago
  
  954ecd5f
- Change R version and output. · e7b72cfb
  Venkat Malladi authored 6 years ago
  
  e7b72cfb
Dec 25, 2018
- Fix our file name · 0f2a8f86
  Venkat Malladi authored 6 years ago
  
  0f2a8f86
- Termite annodb · 931b9086
  Venkat Malladi authored 6 years ago
  
  931b9086
Dec 24, 2018
- Add missing libraries · 16b629be
  Venkat Malladi authored 6 years ago
  
  16b629be
- Remove extra parathesis · c6374f18
  Venkat Malladi authored 6 years ago
  
  c6374f18
- Test annotate peaks. · ea9dc8e6
  Venkat Malladi authored 6 years ago
  
  ea9dc8e6
- Add in paired end test data. · 7bddefc4
  Venkat Malladi authored 6 years ago
  
  7bddefc4
- Added in test data for comparisions. · cf982549
  Venkat Malladi authored 6 years ago
  
  cf982549
Dec 17, 2018
- Defaulted to zcat instead of unzip file. · ec737360
  Venkat Malladi authored 6 years ago
  
  ec737360
Dec 16, 2018
- Update motif search scripts to meet new python standards · e2f0afca
  Venkat Malladi authored 6 years ago
  
  e2f0afca
- Merge branch 'master' into 15_Annotation_diff_bind · fa33cd9b
  Venkat Malladi authored 6 years ago
  
  fa33cd9b
Nov 02, 2018
- Rever changes. · 7b165eab
  Venkat Malladi authored 6 years ago
  
  7b165eab
Nov 01, 2018
- Add missing deeptools script. · 2cdebf21
  Venkat Malladi authored 6 years ago
  
  publish_0.0.16
  
  2cdebf21
- Fix Beibei's version of pipeline. · c011b6a1
  Venkat Malladi authored 6 years ago
  
  publish_0.0.15
  
  c011b6a1
Oct 31, 2018
- Revert changes. · df14067f
  Venkat Malladi authored 6 years ago
  
  df14067f
- Add in old main.nf to fix organism in chipseeker. · bb5a6702
  Venkat Malladi authored 6 years ago
  
  publish_0.0.14
  
  bb5a6702
- Revert main · acebeb68
  Venkat Malladi authored 6 years ago
  
  acebeb68
- Fix current chip-seq pipeline. · 2d887a76
  Venkat Malladi authored 6 years ago
  
  2d887a76
Aug 14, 2018
- Add proper syntax. · f44b0481
  Venkat Malladi authored 6 years ago
  
  f44b0481
- Fix syntax and readlines. · 6a2d842c
  Venkat Malladi authored 6 years ago
  
  6a2d842c
- New test. · a0568644
  Venkat Malladi authored 6 years ago
  
  a0568644
- Fix reading experiment files. · 3df606ed
  Venkat Malladi authored 6 years ago
  
  3df606ed
- Change to just size. · c0d36466
  Venkat Malladi authored 6 years ago
  
  c0d36466
- Change to new conventions. · 035156b7
  Venkat Malladi authored 6 years ago
  
  035156b7