Commits · a5928f13aa98725cfa93a27e2e735f9cffe438e5 · Astrocyte / Workflows / BICF / chipseq_analysis

May 17, 2019
- Add in License. · 9a1711cf
  Venkat Malladi authored 5 years ago
  
  9a1711cf
Mar 14, 2019
- Update byte output and conf. · 562c52bc
  Venkat Malladi authored 6 years ago
  
  562c52bc
Mar 13, 2019
- Revert back to bytes. · de9c71ea
  Venkat Malladi authored 6 years ago
  
  de9c71ea
- Change from bytes to string. · 5f6d04dd
  Venkat Malladi authored 6 years ago
  
  5f6d04dd
Mar 08, 2019
- Add in software version parsing. · ff9999f2
  Venkat Malladi authored 6 years ago
  
  ff9999f2
Jan 14, 2019
- Fix Trim reads output to match. · 483dd61f
  Venkat Malladi authored 6 years ago
  
  483dd61f
- Update tests and output file names. · 2b651306
  Venkat Malladi authored 6 years ago
  
  2b651306
Jan 11, 2019
- Fix variable name. · bb9b42c8
  Venkat Malladi authored 6 years ago
  
  bb9b42c8
- Fix array rename. · d3003427
  Venkat Malladi authored 6 years ago
  
  d3003427
- Fix trim reads input. · fac677c3
  Venkat Malladi authored 6 years ago
  
  fac677c3
Jan 06, 2019
- Change fastq's to be new sample names as defined by the sample_id. · cec86acd
  Venkat Malladi authored 6 years ago
  
  cec86acd
Oct 26, 2017
- Refactor code to have consistent use of arguments and referenceing pandas. · 249284b7
  Venkat Malladi authored 7 years ago
  
  249284b7
Oct 25, 2017
- Fix syntax of get_args across all scripts. · 648dc44d
  Venkat Malladi authored 7 years ago
  
  648dc44d
Oct 08, 2017
- Cleanup code after flake8. · daaf631d
  Venkat Malladi authored 7 years ago
  
  daaf631d
Oct 03, 2017
- Consistency in documentation. · 932baa0d
  Venkat Malladi authored 7 years ago
  
  932baa0d
- Update trim_reads to extrapolate the params. · 13fe4335
  Venkat Malladi authored 7 years ago
  
  13fe4335
- Update trim command name. · fd33ecb7
  Venkat Malladi authored 7 years ago
  
  fd33ecb7
- Add in argument for trim_parameters. · 5532fa6d
  Venkat Malladi authored 7 years ago
  
  5532fa6d
- update path variables in logger output · b583f9b0
  Venkat Malladi authored 7 years ago
  
  b583f9b0
- update path variables · 31ffef27
  Venkat Malladi authored 7 years ago
  
  31ffef27
- Fix logger syntax. · 4b135733
  Venkat Malladi authored 7 years ago
  
  4b135733
Oct 01, 2017
- Add triming of reads, remove fastqc step. · 84872f97
  Venkat Malladi authored 7 years ago
  
  84872f97
Sep 30, 2017
- Add in fastqc step. · 3d73714a
  Venkat Malladi authored 7 years ago
  
  3d73714a
Sep 20, 2017
- update syntax and order of qc_fastq.py · dfed27c2
  Venkat Malladi authored 7 years ago
  
  dfed27c2
Sep 13, 2017
- Add in test data and updated scripts. · db1c9133
  Venkat Malladi authored 7 years ago
  
  db1c9133
Sep 12, 2017
- Update name of task and permission. · 73082a3c
  Venkat Malladi authored 7 years ago
  
  73082a3c
- First test at using fastqc. · ad1a4aa5
  Venkat Malladi authored 7 years ago
  
  ad1a4aa5