Commits · 61db854ac1fcdb60431ad48a0a5cab0255d9c2d3 · Astrocyte / Workflows / BICF / chipseq_analysis

Apr 16, 2020
- Make gtf taken an option · 61db854a
  Venkat Malladi authored 5 years ago
  
  61db854a
- Merge branch 'master' into 75-rename_plotprofile · 54b9865d
  Venkat Malladi authored 5 years ago
  
  54b9865d
- Merge branch 'ci-merge-test' into 'master' · df7ed9bf
  Gervaise Henry authored 5 years ago
```
Ci merge test

Closes #79 and #80

See merge request !68
```
  df7ed9bf
Apr 15, 2020
- Fix CI badges · 0d74d3f3
  Venkat Malladi authored 5 years ago
  
  0d74d3f3
- Update Pipeline status badge · 1e33da50
  Venkat Malladi authored 5 years ago
  
  1e33da50
Apr 13, 2020
- Merge branch '80-concurrent_issue' into ci-merge-test · 082cc46d
  Venkat Malladi authored 5 years ago
  
  082cc46d
- Remove the concurrent issue and moved to config file. · 0de688a6
  Venkat Malladi authored 5 years ago
  
  0de688a6
Mar 28, 2020
- Merge branch '80-concurrent_issue' into ci-merge-test · a1d4744c
  Venkat Malladi authored 5 years ago
  
  a1d4744c
- remove after script. · 24f3252e
  Venkat Malladi authored 5 years ago
  
  24f3252e
- Merge branch '80-concurrent_issue' into ci-merge-test · ad917147
  Venkat Malladi authored 5 years ago
  
  ad917147
- remove work directory. · fa258f22
  Venkat Malladi authored 5 years ago
  
  fa258f22
- Added in cleanup as well and new structure. · ba0e0850
  Venkat Malladi authored 5 years ago
  
  ba0e0850
- Merge branch '79-sigbus_error' into ci-merge-test · d7f31c15
  Venkat Malladi authored 5 years ago
  
  d7f31c15
- Update with pipelineid. · 96ed1fb4
  Venkat Malladi authored 5 years ago
  
  96ed1fb4
- Add the id of the persont hat created the job. · bac9290e
  Venkat Malladi authored 5 years ago
  
  bac9290e
- Add back runner id. · a7d13749
  Venkat Malladi authored 5 years ago
  
  a7d13749
- Update concurrent path. · b95a06ea
  Venkat Malladi authored 5 years ago
  
  b95a06ea
- Add Nextflow opts. · 92ea443a
  Venkat Malladi authored 5 years ago
  
  92ea443a
Mar 27, 2020
- Update .gitlab-ci.yml · 01e0f56e
  Venkat Malladi authored 5 years ago
  
  01e0f56e
- Complicated path · b7eba1f3
  Venkat Malladi authored 5 years ago
  
  b7eba1f3
Mar 24, 2020
- Merge branch '73-single_pool' into 'master' · e09a8b62
  Holly Ruess authored 5 years ago
```
Resolve "Single Rep Pool and Pseudo"

Closes #73

See merge request BICF/Astrocyte/chipseq_analysis!63
```
  e09a8b62
- Fix option parsing. · 0307bd09
  Venkat Malladi authored 5 years ago
  
  0307bd09
Mar 23, 2020
- Fix spacing. · 807f5ec0
  Venkat Malladi authored 5 years ago
  
  807f5ec0
- Test that size is greater than 0. · e952181e
  Venkat Malladi authored 5 years ago
  
  e952181e
- Check if file exists and not empty. · 7df1a370
  Venkat Malladi authored 5 years ago
  
  7df1a370
- Update file paths. · f76f9efd
  Venkat Malladi authored 5 years ago
  
  f76f9efd
Mar 21, 2020
- Merge branch '77-upgrade_astrocyte' into 'master' · 14d69096
  Spencer Barnes authored 5 years ago
```
Update to test with new astrocyte runner.

Closes #77

See merge request BICF/Astrocyte/chipseq_analysis!66
```
  14d69096
- Add usage statement. · 8fba6bd9
  Venkat Malladi authored 5 years ago
  
  8fba6bd9
- Update documentation and use GTF file. · d9e3b2b4
  Venkat Malladi authored 5 years ago
  
  d9e3b2b4
Mar 20, 2020
- Remove redundant test. · f6951a42
  Venkat Malladi authored 5 years ago
  
  f6951a42
- Unit test other functions. · a79a5aac
  Venkat Malladi authored 5 years ago
  
  a79a5aac
Mar 19, 2020
- Update to test with new astrocyte runner. · edf862a7
  Venkat Malladi authored 5 years ago
  
  edf862a7
- Add new parrallel unit test. · bc3cbdee
  Venkat Malladi authored 5 years ago
  
  bc3cbdee
- testing using bats. · 96612335
  Venkat Malladi authored 5 years ago
  
  96612335
Mar 16, 2020
- Update flag · 21a78fc3
  Venkat Malladi authored 5 years ago
  
  21a78fc3
Mar 15, 2020
- Change options for ulimit · d7b3270d
  Venkat Malladi authored 5 years ago
  
  d7b3270d
- Merge branch 'master' into 75-rename_plotprofile · 20e127c3
  Venkat Malladi authored 5 years ago
  
  20e127c3
- Merge branch '73-single_pool' of... · abcbdb32
  Venkat Malladi authored 5 years ago
```
Merge branch '73-single_pool' of git.biohpc.swmed.edu:BICF/Astrocyte/chipseq_analysis into 73-single_pool
```
  abcbdb32
- Clear java core dumps. · 3b0aeaf6
  Venkat Malladi authored 5 years ago
  
  3b0aeaf6
- Merge branch 'master' into '73-single_pool' · 5ce018b0
  Venkat Malladi authored 5 years ago
```
# Conflicts:
#   CHANGELOG.md

Consolidate Changelog
```
  5ce018b0