Commits · 471773a6775749084f39e03c9f91883a012ea491 · Astrocyte / Workflows / BICF / chipseq_analysis

"workflow/scripts/get_updated_badge_info.sh" did not exist on "543f68f68fd22e1b25d978fe05a07b6d87c75012"

Oct 10, 2017
- Fix outputs. · c41e1217
  Venkat Malladi authored 7 years ago
  
  c41e1217
Oct 09, 2017
- Fix option. · 2c4516e9
  Venkat Malladi authored 7 years ago
  
  2c4516e9
- update output. · 7d54e3fe
  Venkat Malladi authored 7 years ago
  
  7d54e3fe
- Add in steps to remove dups and filter reads. · 3a9a868b
  Venkat Malladi authored 7 years ago
  
  3a9a868b
- Update file collection. · 9acca710
  Venkat Malladi authored 7 years ago
  
  9acca710
Oct 08, 2017
- Change genome to GRCm38 to reflect data. · b59f7e0c
  Venkat Malladi authored 7 years ago
  
  b59f7e0c
- collect the qc metrics. · a33eb4d4
  Venkat Malladi authored 7 years ago
  
  a33eb4d4
Oct 07, 2017
- Fix the output directory name. · e38a082d
  Venkat Malladi authored 7 years ago
  
  e38a082d
Oct 06, 2017
- Use python3 for testing the design file and use local for this. · 970fea4b
  Venkat Malladi authored 7 years ago
  
  970fea4b
- Fix missing libraries and use of python3. · 861b7993
  Venkat Malladi authored 7 years ago
  
  861b7993
Oct 05, 2017
- Add in maping step with apporpriate configurations. · 14299993
  Venkat Malladi authored 7 years ago
  
  14299993
Oct 03, 2017
- Add in trimming step into workflow. · f3c034a7
  Venkat Malladi authored 7 years ago
  
  f3c034a7
Oct 01, 2017
- Add triming of reads, remove fastqc step. · 84872f97
  Venkat Malladi authored 7 years ago
  
  84872f97
Sep 30, 2017
- Add in fastqc step. · 3d73714a
  Venkat Malladi authored 7 years ago
  
  3d73714a
Sep 28, 2017
- Pass nextflow test for design file. · 8ef6e674
  Venkat Malladi authored 7 years ago
  
  8ef6e674
Sep 13, 2017
- Add gitlab-ci test configuration and update testing. · 5f7f3d0f
  Venkat Malladi authored 7 years ago
  
  5f7f3d0f
- Add in test data and updated scripts. · db1c9133
  Venkat Malladi authored 7 years ago
  
  db1c9133
Sep 12, 2017
- Update name of task and permission. · 73082a3c
  Venkat Malladi authored 7 years ago
  
  73082a3c
- Update modules. · b5d2122c
  Venkat Malladi authored 7 years ago
  
  b5d2122c
- First test at using fastqc. · ad1a4aa5
  Venkat Malladi authored 7 years ago
  
  ad1a4aa5
Apr 26, 2017
- remove unessessory files · 3cc1bd73
  Beibei Chen authored 7 years ago
  
  3cc1bd73
Apr 25, 2017
- Add deeptools for twobitreader package · d5e69757
  Beibei Chen authored 7 years ago
  
  publish_0.0.7
  
  d5e69757
Apr 21, 2017
- fix path and bam indexing · d100d917
  Beibei Chen authored 7 years ago
  
  d100d917
- update path · 16c0daa7
  Beibei Chen authored 7 years ago
  
  16c0daa7
Mar 03, 2017
- typo fix · fb9bb7ef
  Beibei Chen authored 8 years ago
  
  fb9bb7ef
- update R moudle · 77a40f95
  Beibei Chen authored 8 years ago
  
  77a40f95
Feb 10, 2017
- astrocyte test done · 12f65b9c
  Beibei Chen authored 8 years ago
  
  12f65b9c
Feb 08, 2017
- Got rid of abs path · 014508e5
  Beibei Chen authored 8 years ago
  
  014508e5
Feb 03, 2017
- main works · 6e0bfcf3
  Beibei Chen authored 8 years ago
  
  6e0bfcf3
- meme original works · eff4984e
  Beibei Chen authored 8 years ago
  
  eff4984e
- diffbind works · f378ae81
  Beibei Chen authored 8 years ago
  
  f378ae81
Feb 02, 2017
- design process and deeptools works for main · 16e47ae1
  Beibei Chen authored 8 years ago
  
  16e47ae1
Jan 31, 2017
- nextflow works · f0b36739
  Beibei Chen authored 8 years ago
  
  f0b36739
Jan 26, 2017
- deeptools works · 28e471cd
  Beibei Chen authored 8 years ago
  
  28e471cd
Dec 29, 2016
- chipseeker framework done. Need to test diffbind output column name conflict · 22946049
  Beibei Chen authored 8 years ago
  
  22946049
Dec 27, 2016
- runDiffBind output bed format · be305349
  Beibei Chen authored 8 years ago
  
  be305349
- deeptools qc works · a6ac0e3f
  Beibei Chen authored 8 years ago
  
  a6ac0e3f
Nov 28, 2016
- update main · f14f792c
  Beibei Chen authored 8 years ago
  
  f14f792c
- runDiffBind R code works · bb191595
  Beibei Chen authored 8 years ago
  
  bb191595
Nov 21, 2016
- update scripts · ad56b868
  Beibei Chen authored 8 years ago
  
  ad56b868