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Commit f4474da5 authored by Thamer Alsulaiman's avatar Thamer Alsulaiman
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updated executor for all processes

parent 1309b519
2 merge requests!3Containerized version of chip-seq analysis,!2Added new Docker file for motif search (named meme-5.5.4) installed from...
Pipeline #14741 failed with stages
......@@ -21,7 +21,7 @@ process {
withName: checkDesignFile {
container = 'docker://git.biohpc.swmed.edu:5050/astrocyte/workflows/bicf/chipseq_analysis/py36:1.0.0'
executor = 'local'
queue = 'super'
}
withName: trimReads {
container = 'docker://git.biohpc.swmed.edu:5050/astrocyte/workflows/bicf/chipseq_analysis/chipseq:1.0.0'
......@@ -45,15 +45,15 @@ process {
}
withName: crossReads {
container = 'docker://git.biohpc.swmed.edu:5050/astrocyte/workflows/bicf/chipseq_analysis/chipseq:1.0.0'
cpus = 32
queue = 'super'
}
withName: defineExpDesignFiles {
container = 'docker://git.biohpc.swmed.edu:5050/astrocyte/workflows/bicf/chipseq_analysis/py36:1.0.0'
executor = 'local'
queue = 'super'
}
withName: poolAndPsuedoReads {
container = 'docker://git.biohpc.swmed.edu:5050/astrocyte/workflows/bicf/chipseq_analysis/py36:1.0.0'
executor = 'local'
queue = 'super'
}
withName: callPeaksMACS {
container = 'docker://git.biohpc.swmed.edu:5050/astrocyte/workflows/bicf/chipseq_analysis/chipseq:1.0.0'
......@@ -81,7 +81,7 @@ process {
}
withName: multiqcReport {
container = 'docker://git.biohpc.swmed.edu:5050/astrocyte/workflows/bicf/chipseq_analysis/chipseq:1.0.0'
executor = 'local'
queue = 'super'
}
}
......
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