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Commit f0fbf42b authored by Venkat Malladi's avatar Venkat Malladi
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Add in test for verifying single end trim reads.

parent b59f7e0c
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......@@ -6,10 +6,15 @@ import gzip
def test_trim_reads_singleend():
# assert os.path.getsize('sample1_R1.fastq.gz') != os.path.getsize('sample1_R1.trim.fastq.gz')
# check the size of the lines using
# a = sum(1 for _ in gzip.open('input_2.small_R1.fastq.gz'))
pass
raw_fastq = os.path.dirname(os.path.abspath(__file__)) +
'../../test_data/ENCFF833BLU_fastq.gz')
trimmed_fastq = os.path.dirname(os.path.abspath(__file__)) +
'../output/trimReads/ENCFF833BLU_trimmed.fq.gz')
trimmed_fastq_report = os.path.dirname(os.path.abspath(__file__)) +
'../output/trimReads/ENCFF833BLU.fastq.gz_trimming_report.txt')
assert os.path.getsize(raw_fastq) != os.path.getsize(trimmed_fastq)
assert os.path.getsize(trimmed_fastq) == 2512853101
assert 'Trimming mode: single-end' in open(trimmed_fastq_report).readlines()[4]
def test_trim_reads_pairedend():
......
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