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Commit d7b5e667 authored by Thamer Alsulaiman's avatar Thamer Alsulaiman
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updated main to use back python docker with entrypoint

parent b755c158
2 merge requests!3Containerized version of chip-seq analysis,!2Added new Docker file for motif search (named meme-5.5.4) installed from...
Pipeline #14462 failed with stages
......@@ -147,11 +147,13 @@ process checkDesignFile {
if (pairedEnd) {
"""
source /python361/entrypoint.sh
python3 $baseDir/scripts/check_design.py -d $designFile -f $readsList -p
"""
}
else {
"""
source /python361/entrypoint.sh
python3 $baseDir/scripts/check_design.py -d $designFile -f $readsList
"""
}
......@@ -395,6 +397,7 @@ process defineExpDesignFiles {
script:
"""
source /python361/entrypoint.sh
python3 $baseDir/scripts/experiment_design.py -d $xcorDesign
"""
......@@ -420,11 +423,13 @@ process poolAndPsuedoReads {
if (pairedEnd) {
"""
source /python361/entrypoint.sh
python3 $baseDir/scripts/pool_and_psuedoreplicate.py -d $experimentObjs -c $cutoffRatio -p
"""
}
else {
"""
source /python361/entrypoint.sh
python3 $baseDir/scripts/pool_and_psuedoreplicate.py -d $experimentObjs -c $cutoffRatio
"""
}
......
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