Skip to content
Snippets Groups Projects
Commit b095c05f authored by Venkat Malladi's avatar Venkat Malladi
Browse files

Remove extra bwa command.

parent 276dac3b
Branches
Tags
No related merge requests found
Hide whitespace changes
Inline Side-by-side
workflow/scripts/pool_and_psuedoreplicate.py
+ 0
− 3
View file @ b095c05f
...@@ -153,9 +153,6 @@ def self_psuedoreplication(tag_file, prefix, paired): ...@@ -153,9 +153,6 @@ def self_psuedoreplication(tag_file, prefix, paired):
logger.info("Running psuedo with %s", psuedo_command) logger.info("Running psuedo with %s", psuedo_command)
subprocess.check_call(shlex.split(psuedo_command)) subprocess.check_call(shlex.split(psuedo_command))
logger.info("Running bwa with %s", bwa_command)
subprocess.check_call(shlex.split(bwa_command), stdout=sai_file)
# Convert read pairs to reads into standard tagAlign file # Convert read pairs to reads into standard tagAlign file
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment